R6 Ballot (2nd Draft)

Publish-box (todo)

Biomedical Research and Regulation icon Work GroupMaturity Level: 0 Trial UseSecurity Category: Anonymous Compartments: No defined compartments

Detailed Descriptions for the elements in the SubstanceSourceMaterial resource.

SubstanceSourceMaterial
Element Id SubstanceSourceMaterial
Definition

Source material shall capture information on the taxonomic and anatomical origins as well as the fraction of a material that can result in or can be modified to form a substance. This set of data elements shall be used to define polymer substances isolated from biological matrices. Taxonomic and anatomical origins shall be described using a controlled vocabulary as required. This information is captured for naturally derived polymers ( . starch) and structurally diverse substances. For Organisms belonging to the Kingdom Plantae the Substance level defines the fresh material of a single species or infraspecies, the Herbal Drug and the Herbal preparation. For Herbal preparations, the fraction information will be captured at the Substance information level and additional information for herbal extracts will be captured at the Specified Substance Group 1 information level. See for further explanation the Substance Class: Structurally Diverse and the herbal annex.

Short Display Source material shall capture information on the taxonomic and anatomical origins as well as the fraction of a material that can result in or can be modified to form a substance. This set of data elements shall be used to define polymer substances isolated from biological matrices. Taxonomic and anatomical origins shall be described using a controlled vocabulary as required. This information is captured for naturally derived polymers ( . starch) and structurally diverse substances. For Organisms belonging to the Kingdom Plantae the Substance level defines the fresh material of a single species or infraspecies, the Herbal Drug and the Herbal preparation. For Herbal preparations, the fraction information will be captured at the Substance information level and additional information for herbal extracts will be captured at the Specified Substance Group 1 information level. See for further explanation the Substance Class: Structurally Diverse and the herbal annex
Cardinality 0..*
Type DomainResource
Summary false
SubstanceSourceMaterial.sourceMaterialClass
Element Id SubstanceSourceMaterial.sourceMaterialClass
Definition

General high level classification of the source material specific to the origin of the material.

Short Display General high level classification of the source material specific to the origin of the material
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.sourceMaterialType
Element Id SubstanceSourceMaterial.sourceMaterialType
Definition

The type of the source material shall be specified based on a controlled vocabulary. For vaccines, this subclause refers to the class of infectious agent.

Short Display The type of the source material shall be specified based on a controlled vocabulary. For vaccines, this subclause refers to the class of infectious agent
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.sourceMaterialState
Element Id SubstanceSourceMaterial.sourceMaterialState
Definition

The state of the source material when extracted.

Short Display The state of the source material when extracted
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organismId
Element Id SubstanceSourceMaterial.organismId
Definition

The unique identifier associated with the source material parent organism shall be specified.

Short Display The unique identifier associated with the source material parent organism shall be specified
Cardinality 0..1
Type Identifier
Summary true
SubstanceSourceMaterial.organismName
Element Id SubstanceSourceMaterial.organismName
Definition

The organism accepted Scientific name shall be provided based on the organism taxonomy.

Short Display The organism accepted Scientific name shall be provided based on the organism taxonomy
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.parentSubstanceId
Element Id SubstanceSourceMaterial.parentSubstanceId
Definition

The parent of the herbal drug Ginkgo biloba, Leaf is the substance ID of the substance (fresh) of Ginkgo biloba L. or Ginkgo biloba L. (Whole plant).

Short Display The parent of the herbal drug Ginkgo biloba, Leaf is the substance ID of the substance (fresh) of Ginkgo biloba L. or Ginkgo biloba L. (Whole plant)
Cardinality 0..*
Type Identifier
Summary true
SubstanceSourceMaterial.parentSubstanceName
Element Id SubstanceSourceMaterial.parentSubstanceName
Definition

The parent substance of the Herbal Drug, or Herbal preparation.

Short Display The parent substance of the Herbal Drug, or Herbal preparation
Cardinality 0..*
Type string
Summary true
SubstanceSourceMaterial.countryOfOrigin
Element Id SubstanceSourceMaterial.countryOfOrigin
Definition

The country where the plant material is harvested or the countries where the plasma is sourced from as laid down in accordance with the Plasma Master File. For “Plasma-derived substances” the attribute country of origin provides information about the countries used for the manufacturing of the Cryopoor plama or Crioprecipitate.

Short Display The country where the plant material is harvested or the countries where the plasma is sourced from as laid down in accordance with the Plasma Master File. For “Plasma-derived substances” the attribute country of origin provides information about the countries used for the manufacturing of the Cryopoor plama or Crioprecipitate
Cardinality 0..*
Type CodeableConcept
Summary true
SubstanceSourceMaterial.geographicalLocation
Element Id SubstanceSourceMaterial.geographicalLocation
Definition

The place/region where the plant is harvested or the places/regions where the animal source material has its habitat.

Short Display The place/region where the plant is harvested or the places/regions where the animal source material has its habitat
Cardinality 0..*
Type string
Summary true
SubstanceSourceMaterial.developmentStage
Element Id SubstanceSourceMaterial.developmentStage
Definition

Stage of life for animals, plants, insects and microorganisms. This information shall be provided only when the substance is significantly different in these stages (e.g. foetal bovine serum).

Short Display Stage of life for animals, plants, insects and microorganisms. This information shall be provided only when the substance is significantly different in these stages (e.g. foetal bovine serum)
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.fractionDescription
Element Id SubstanceSourceMaterial.fractionDescription
Definition

Many complex materials are fractions of parts of plants, animals, or minerals. Fraction elements are often necessary to define both Substances and Specified Group 1 Substances. For substances derived from Plants, fraction information will be captured at the Substance information level ( . Oils, Juices and Exudates). Additional information for Extracts, such as extraction solvent composition, will be captured at the Specified Substance Group 1 information level. For plasma-derived products fraction information will be captured at the Substance and the Specified Substance Group 1 levels.

Short Display Many complex materials are fractions of parts of plants, animals, or minerals. Fraction elements are often necessary to define both Substances and Specified Group 1 Substances. For substances derived from Plants, fraction information will be captured at the Substance information level ( . Oils, Juices and Exudates). Additional information for Extracts, such as extraction solvent composition, will be captured at the Specified Substance Group 1 information level. For plasma-derived products fraction information will be captured at the Substance and the Specified Substance Group 1 levels
Cardinality 0..*
Summary true
SubstanceSourceMaterial.fractionDescription.fraction
Element Id SubstanceSourceMaterial.fractionDescription.fraction
Definition

This element is capturing information about the fraction of a plant part, or human plasma for fractionation.

Short Display This element is capturing information about the fraction of a plant part, or human plasma for fractionation
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.fractionDescription.materialType
Element Id SubstanceSourceMaterial.fractionDescription.materialType
Definition

The specific type of the material constituting the component. For Herbal preparations the particulars of the extracts (liquid/dry) is described in Specified Substance Group 1.

Short Display The specific type of the material constituting the component. For Herbal preparations the particulars of the extracts (liquid/dry) is described in Specified Substance Group 1
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism
Element Id SubstanceSourceMaterial.organism
Definition

This subclause describes the organism which the substance is derived from. For vaccines, the parent organism shall be specified based on these subclause elements. As an example, full taxonomy will be described for the Substance Name: ., Leaf.

Short Display This subclause describes the organism which the substance is derived from. For vaccines, the parent organism shall be specified based on these subclause elements. As an example, full taxonomy will be described for the Substance Name: ., Leaf
Cardinality 0..1
Summary true
SubstanceSourceMaterial.organism.family
Element Id SubstanceSourceMaterial.organism.family
Definition

The family of an organism shall be specified.

Short Display The family of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.genus
Element Id SubstanceSourceMaterial.organism.genus
Definition

The genus of an organism shall be specified; refers to the Latin epithet of the genus element of the plant/animal scientific name; it is present in names for genera, species and infraspecies.

Short Display The genus of an organism shall be specified; refers to the Latin epithet of the genus element of the plant/animal scientific name; it is present in names for genera, species and infraspecies
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.species
Element Id SubstanceSourceMaterial.organism.species
Definition

The species of an organism shall be specified; refers to the Latin epithet of the species of the plant/animal; it is present in names for species and infraspecies.

Short Display The species of an organism shall be specified; refers to the Latin epithet of the species of the plant/animal; it is present in names for species and infraspecies
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.intraspecificType
Element Id SubstanceSourceMaterial.organism.intraspecificType
Definition

The Intraspecific type of an organism shall be specified.

Short Display The Intraspecific type of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.intraspecificDescription
Element Id SubstanceSourceMaterial.organism.intraspecificDescription
Definition

The intraspecific description of an organism shall be specified based on a controlled vocabulary. For Influenza Vaccine, the intraspecific description shall contain the syntax of the antigen in line with the WHO convention.

Short Display The intraspecific description of an organism shall be specified based on a controlled vocabulary. For Influenza Vaccine, the intraspecific description shall contain the syntax of the antigen in line with the WHO convention
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.author
Element Id SubstanceSourceMaterial.organism.author
Definition

4.9.13.6.1 Author type (Conditional).

Short Display 4.9.13.6.1 Author type (Conditional)
Cardinality 0..*
Summary true
SubstanceSourceMaterial.organism.author.authorType
Element Id SubstanceSourceMaterial.organism.author.authorType
Definition

The type of author of an organism species shall be specified. The parenthetical author of an organism species refers to the first author who published the plant/animal name (of any rank). The primary author of an organism species refers to the first author(s), who validly published the plant/animal name.

Short Display The type of author of an organism species shall be specified. The parenthetical author of an organism species refers to the first author who published the plant/animal name (of any rank). The primary author of an organism species refers to the first author(s), who validly published the plant/animal name
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.author.authorDescription
Element Id SubstanceSourceMaterial.organism.author.authorDescription
Definition

The author of an organism species shall be specified. The author year of an organism shall also be specified when applicable; refers to the year in which the first author(s) published the infraspecific plant/animal name (of any rank).

Short Display The author of an organism species shall be specified. The author year of an organism shall also be specified when applicable; refers to the year in which the first author(s) published the infraspecific plant/animal name (of any rank)
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.hybrid
Element Id SubstanceSourceMaterial.organism.hybrid
Definition

4.9.13.8.1 Hybrid species maternal organism ID (Optional).

Short Display 4.9.13.8.1 Hybrid species maternal organism ID (Optional)
Cardinality 0..1
Summary true
SubstanceSourceMaterial.organism.hybrid.maternalOrganismId
Element Id SubstanceSourceMaterial.organism.hybrid.maternalOrganismId
Definition

The identifier of the maternal species constituting the hybrid organism shall be specified based on a controlled vocabulary. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal.

Short Display The identifier of the maternal species constituting the hybrid organism shall be specified based on a controlled vocabulary. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.hybrid.maternalOrganismName
Element Id SubstanceSourceMaterial.organism.hybrid.maternalOrganismName
Definition

The name of the maternal species constituting the hybrid organism shall be specified. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal.

Short Display The name of the maternal species constituting the hybrid organism shall be specified. For plants, the parents aren’t always known, and it is unlikely that it will be known which is maternal and which is paternal
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.hybrid.paternalOrganismId
Element Id SubstanceSourceMaterial.organism.hybrid.paternalOrganismId
Definition

The identifier of the paternal species constituting the hybrid organism shall be specified based on a controlled vocabulary.

Short Display The identifier of the paternal species constituting the hybrid organism shall be specified based on a controlled vocabulary
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.hybrid.paternalOrganismName
Element Id SubstanceSourceMaterial.organism.hybrid.paternalOrganismName
Definition

The name of the paternal species constituting the hybrid organism shall be specified.

Short Display The name of the paternal species constituting the hybrid organism shall be specified
Cardinality 0..1
Type string
Summary true
SubstanceSourceMaterial.organism.hybrid.hybridType
Element Id SubstanceSourceMaterial.organism.hybrid.hybridType
Definition

The hybrid type of an organism shall be specified.

Short Display The hybrid type of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.organismGeneral
Element Id SubstanceSourceMaterial.organism.organismGeneral
Definition

4.9.13.7.1 Kingdom (Conditional).

Short Display 4.9.13.7.1 Kingdom (Conditional)
Cardinality 0..1
Summary true
SubstanceSourceMaterial.organism.organismGeneral.kingdom
Element Id SubstanceSourceMaterial.organism.organismGeneral.kingdom
Definition

The kingdom of an organism shall be specified.

Short Display The kingdom of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.organismGeneral.phylum
Element Id SubstanceSourceMaterial.organism.organismGeneral.phylum
Definition

The phylum of an organism shall be specified.

Short Display The phylum of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.organismGeneral.class
Element Id SubstanceSourceMaterial.organism.organismGeneral.class
Definition

The class of an organism shall be specified.

Short Display The class of an organism shall be specified
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.organism.organismGeneral.order
Element Id SubstanceSourceMaterial.organism.organismGeneral.order
Definition

The order of an organism shall be specified,.

Short Display The order of an organism shall be specified,
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.partDescription
Element Id SubstanceSourceMaterial.partDescription
Definition

To do.

Short Display To do
Cardinality 0..*
Summary true
SubstanceSourceMaterial.partDescription.part
Element Id SubstanceSourceMaterial.partDescription.part
Definition

Entity of anatomical origin of source material within an organism.

Short Display Entity of anatomical origin of source material within an organism
Cardinality 0..1
Type CodeableConcept
Summary true
SubstanceSourceMaterial.partDescription.partLocation
Element Id SubstanceSourceMaterial.partDescription.partLocation
Definition

The detailed anatomic location when the part can be extracted from different anatomical locations of the organism. Multiple alternative locations may apply.

Short Display The detailed anatomic location when the part can be extracted from different anatomical locations of the organism. Multiple alternative locations may apply
Cardinality 0..1
Type CodeableConcept
Summary true