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10.8.12.14.4 StructureDefinition: MolecularDefinitionGenotype - Mappings

Clinical Genomics icon Work Group  Maturity Level: 0 Trial Use Use Context: Any

Mappings:

FiveWs Pattern Mapping

RIM Mapping

Mappings for the genotype Profile (see Mappings to Other Standards for further information & status).

10.8.12.15 FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

MolecularDefinitionGenotype
MolecularDefinition clinical.diagnostics
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   modifierExtension
   identifier FiveWs.identifier
   type
   location
      id
      extension
      modifierExtension
      sequenceLocation
         id
         extension
         modifierExtension
         sequenceContext
         coordinateInterval
            id
            extension
            modifierExtension
            numberingSystem
            start[x]
            end[x]
         strand
      cytobandLocation
         id
         extension
         modifierExtension
         genomeAssembly
            id
            extension
            modifierExtension
            organism
            build
            accession
            description[x]
         cytobandInterval
            id
            extension
            modifierExtension
            chromosome
            startCytoband
               id
               extension
               modifierExtension
               arm[x]
               region[x]
               band[x]
               subBand[x]
            endCytoband
               id
               extension
               modifierExtension
               arm[x]
               region[x]
               band[x]
               subBand[x]
      featureLocation
         id
         extension
         modifierExtension
         geneId
   memberState
   representation
      id
      extension
      modifierExtension
      focus
      code
      literal
         id
         extension
         modifierExtension
         encoding
         value
      resolvable

10.8.12.16 RIM Mapping (http://hl7.org/v3)

MolecularDefinitionGenotype
MolecularDefinition Entity, Role, or Act
   id
   meta
   implicitRules
   language
   text Act.text?
   contained N/A
   extension N/A
   modifierExtension N/A
   identifier
   type
   location
      id n/a
      extension n/a
      modifierExtension N/A
      sequenceLocation
         id n/a
         extension n/a
         modifierExtension N/A
         sequenceContext
         coordinateInterval
            id n/a
            extension n/a
            modifierExtension N/A
            numberingSystem
            start[x]
            end[x]
         strand
      cytobandLocation
         id n/a
         extension n/a
         modifierExtension N/A
         genomeAssembly
            id n/a
            extension n/a
            modifierExtension N/A
            organism
            build
            accession
            description[x]
         cytobandInterval
            id n/a
            extension n/a
            modifierExtension N/A
            chromosome
            startCytoband
               id n/a
               extension n/a
               modifierExtension N/A
               arm[x]
               region[x]
               band[x]
               subBand[x]
            endCytoband
               id n/a
               extension n/a
               modifierExtension N/A
               arm[x]
               region[x]
               band[x]
               subBand[x]
      featureLocation
         id n/a
         extension n/a
         modifierExtension N/A
         geneId
   memberState
   representation
      id n/a
      extension n/a
      modifierExtension N/A
      focus
      code
      literal
         id n/a
         extension n/a
         modifierExtension N/A
         encoding
         value
      resolvable