Snapshot 3: Connectathon 32 Base

This page is part of the FHIR Specification (v5.0.0-snapshot3: R5 Snapshot #3, to support Connectathon 32). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

4.4.1.689 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Clinical Genomics icon

Work Group

Maturity Level: 1

Trial Use

Use Context: Country: World, Not yet ready for Production use, Not yet ready for Production use

Official URL: `http://hl7.org/fhir/ValueSet/genomicstudy-dataformat`				Version: 5.0.0-snapshot3
draft as of 2022-08-18				Computable Name: GenomicStudyDataFormat
Flags: Experimental				OID: 2.16.840.1.113883.4.642.3.3084

This value set is used in the following places:

CodeSystem: This value set is the designated 'entire code system' value set for GenomicStudyDataFormat
Resource: GenomicStudy.analysis.input.type (CodeableConcept / Example)
Resource: GenomicStudy.analysis.output.type (CodeableConcept / Example)

4.4.1.689.1 Definition

The data formats relevant to Genomic Study analysis.

4.4.1.689.2 Content Logical Definition

Include all codes defined in http://hl7.org/fhir/genomicstudy-dataformat

4.4.1.689.3 Expansion

This expansion generated 14 Dec 2022

This value set contains 40 concepts

Expansion based on GenomicStudyDataFormat v5.0.0-snapshot3 (CodeSystem)

Code	System	Display
bam	http://hl7.org/fhir/genomicstudy-dataformat	BAM
bed	http://hl7.org/fhir/genomicstudy-dataformat	BED
bedpe	http://hl7.org/fhir/genomicstudy-dataformat	BEDPE
bedgraph	http://hl7.org/fhir/genomicstudy-dataformat	BedGraph
bigbed	http://hl7.org/fhir/genomicstudy-dataformat	bigBed
bigWig	http://hl7.org/fhir/genomicstudy-dataformat	bigWig
birdsuite-files	http://hl7.org/fhir/genomicstudy-dataformat	Birdsuite-Files
broadpeak	http://hl7.org/fhir/genomicstudy-dataformat	broadPeak
cbs	http://hl7.org/fhir/genomicstudy-dataformat	CBS
chemical-reactivity-probing-profiles	http://hl7.org/fhir/genomicstudy-dataformat	Chemical-Reactivity-Probing-Profiles
chrom-sizes	http://hl7.org/fhir/genomicstudy-dataformat	chrom-sizes
cn	http://hl7.org/fhir/genomicstudy-dataformat	CN
custom-file-formats	http://hl7.org/fhir/genomicstudy-dataformat	Custom-File-Formats
cytoband	http://hl7.org/fhir/genomicstudy-dataformat	Cytoband
fasta	http://hl7.org/fhir/genomicstudy-dataformat	FASTA
gct	http://hl7.org/fhir/genomicstudy-dataformat	GCT
cram	http://hl7.org/fhir/genomicstudy-dataformat	CRAM
genepred	http://hl7.org/fhir/genomicstudy-dataformat	genePred
gff-gtf	http://hl7.org/fhir/genomicstudy-dataformat	GFF/GTF
gistic	http://hl7.org/fhir/genomicstudy-dataformat	GISTIC
goby	http://hl7.org/fhir/genomicstudy-dataformat	Goby
gwas	http://hl7.org/fhir/genomicstudy-dataformat	GWAS
igv	http://hl7.org/fhir/genomicstudy-dataformat	IGV
loh	http://hl7.org/fhir/genomicstudy-dataformat	LOH
maf-multiple-alignment-format	http://hl7.org/fhir/genomicstudy-dataformat	MAF-Multiple Alignment Format
maf-mutation-annotation-format	http://hl7.org/fhir/genomicstudy-dataformat	MAF-Mutation-Annotation-Format
merged-bam-file	http://hl7.org/fhir/genomicstudy-dataformat	Merged BAM File
mut	http://hl7.org/fhir/genomicstudy-dataformat	MUT
narrowpeak	http://hl7.org/fhir/genomicstudy-dataformat	narrowPeak
psl	http://hl7.org/fhir/genomicstudy-dataformat	PSL
res	http://hl7.org/fhir/genomicstudy-dataformat	RES
rna-secondary-structure-formats	http://hl7.org/fhir/genomicstudy-dataformat	RNA-Secondary-Structure-Formats
sam	http://hl7.org/fhir/genomicstudy-dataformat	SAM
sample-info-attributes-file	http://hl7.org/fhir/genomicstudy-dataformat	Sample-Info-Attributes-file
seg	http://hl7.org/fhir/genomicstudy-dataformat	SEG
tdf	http://hl7.org/fhir/genomicstudy-dataformat	TDF
track-line	http://hl7.org/fhir/genomicstudy-dataformat	Track Line
type-line	http://hl7.org/fhir/genomicstudy-dataformat	Type Line
vcf	http://hl7.org/fhir/genomicstudy-dataformat	VCF
wig	http://hl7.org/fhir/genomicstudy-dataformat	WIG

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

Lvl

A few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information

Source

The source of the definition of the code (when the value set draws in codes defined elsewhere)

Code

The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')

Display

The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application

Definition

An explanation of the meaning of the concept

Comments

Additional notes about how to use the code