This page is part of the FHIR Specification (v5.0.0-snapshot3: R5 Snapshot #3, to support Connectathon 32). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3 R2

9.1 Resource AllergyIntolerance - Content

Patient Care icon

Work Group

Maturity Level: 3

Trial Use

Security Category: Patient

Compartments: Patient, Practitioner, RelatedPerson

Risk of harmful or undesirable physiological response which is specific to an individual and associated with exposure to a substance.

9.1.1 Scope and Usage

A record of a clinical assessment of an allergy or intolerance; a propensity, or a potential risk to an individual, to have an adverse reaction on future exposure to the specified substance, or class of substance.

Where a propensity is identified, to record information or evidence about a reaction event that is characterized by any harmful or undesirable physiological response that is specific to the individual and triggered by exposure of an individual to the identified substance or class of substance.

Substances include, but are not limited to: a therapeutic substance administered correctly at an appropriate dosage for the individual; food; material derived from plants or animals; or venom from insect stings.

Note for Reviewers

Presently open issues for this resource:

This resource represents a condition of susceptibility to a substance, with a list of supporting events and/or symptoms, and has no direct relationship to an event reporting framework; this will be re-assessed when adverse event reporting resource(s) and/or profiles are added to FHIR
Other HL7 models and the openEHR archetype have "exposure date" but this is not found in any surveyed systems, so this is left as an extension (more appropriate for adverse event reporting)

9.1.2 Boundaries and Relationships

This resource is used to provide a single place within the health record to document a range of clinical statements about adverse reactions to substances/products, including:

record a clinical assessment of the individual's propensity to a potential future reaction upon re-exposure
record cumulative information about the reaction to each exposure, including 'no reaction' if appropriate

Use to record information about the positive presence of the risk of an adverse reaction:

to support direct clinical care of an individual
as part of a managed adverse reaction or allergy/intolerance list
to support exchange of information about the propensity and events related to adverse reactions
to inform adverse reaction reporting
to assist computerized knowledge-based activities such as clinical decision support and alerts

Use to record information about adverse reactions to a broad range of substances, including: biological & blood products; incipients and excipients in medicinal preparations; foods; metal salts; and organic chemical compounds.

Adverse reactions may be:

an allergy (typically type I hypersensitivity, plus other "allergy-like" reactions, including pseudoallergy)
an intolerance (typically non-immune adverse reactions that are not determined or perceived to be allergic or "allergy-like", and are to some degree idiosyncratic and/or individually specific [i.e. are not a reaction that is expected to occur with most or all patients given similar circumstances])

In clinical practice distinguishing between allergy and intolerance is difficult and might not be practical. Often the term "allergy" is used rather generically and may overlap with "intolerance", and the boundaries between these concepts might not be well-defined or understood. As noted above, the term "intolerance" should generally be applied to a propensity for adverse reactions which is either determined (to the extent that is possible) or perceived to not be allergic or "allergy-like". If it is not possible to determine whether a particular propensity condition is an allergy or an intolerance, then the type element should be omitted from the resource. Identification of the type of reaction is not a proxy for seriousness or risk of harm to the patient, which is better expressed in the documentation of the clinical manifestation and the assessment of criticality.

The sensitivity in the case of either an allergy or intolerance is unique to the individual, and is distinguished from those reactions that are a property of the circumstance, such as toxicity of a food or drug, overdose, drug-drug, drug-food, or drug-disease interaction (which are reactions that would be expected to occur for any individual given the same circumstances).

The risk of an adverse reaction event or manifestation should not be recorded without identifying a proposed causative substance (including pharmaceutical products) or class of substance. If there is uncertainty that a specific substance is the cause, this uncertainty can be recorded using the 'verificationStatus' data element. If there are multiple possible substances that may have caused a reaction/manifestation, each substance should be recorded using a separate instance of this resource with the 'verificationStatus' set to an initial state of 'unconfirmed' so that adverse reaction checking can be supported in clinical systems. If a substance, agent or class is later proven not to be the cause for a given reaction then the 'verificationStatus' can be modified to 'refuted'.

This resource has been designed to allow recording of information about a specific substance (e.g., amoxicillin, oysters, or bee sting venom) or pharmaceutical product or, alternatively, a class of substance (e.g., penicillins). If a class of substance is recorded, then identification of the exact substance can be recorded on a per exposure basis.

The scope of this FHIR resource has deliberately focused on identifying a pragmatic data set that is used in most clinical systems or will be suitable for most common clinical scenarios; extensions can be used to add additional detail if required. Examples of clinical situations where the extension may be required include: a detailed allergist/immunologist assessment, for reporting to regulatory bodies or use in a clinical trial.

The act of recording any adverse reaction in a health record involves the clinical assessment that a potential hazard exists for an individual if they are exposed to the same substance/product/class in the future - that is, a relative contraindication - and, in the absence of additional information indicating a higher level of potential risk, the default 'criticality' value should be set to 'Low Risk'. If a clinician considers that it is not safe for the individual to be deliberately re-exposed to the substance/product again, for example, following a manifestation of a life-threatening anaphylaxis, then the 'criticality' data element should be amended to 'High Risk'.

A formal adverse event report to regulatory bodies is a document that will contain a broad range of information in addition to the specific details about the adverse reaction. The report could utilize parts of this resource plus include additional data as required per jurisdiction.

An adverse reaction or allergy/intolerance list is a record of all identified propensities for an adverse reaction for the individual upon future exposure to the substance/product or class, plus provides potential access to the evidence provided by details about each reaction event, such as manifestation.

Valuable first-level information that could be presented to the clinician when they need to assess propensity for future reactions are:

statements about previous clinical manifestations following exposure
source of the information/reporter
the 'criticality' flag

Second-level information can be drawn from each exposure event and links to additional detailed information such as history, examination and diagnoses stored elsewhere in the record, if it is available.

AllergyIntolerance and RiskAssessment

AllergyIntolerance describes a specific type of risk - propensity to reaction to a substance/product while RiskAssessment describes general risks to a subject, not generally based on a reaction.

AllergyIntolerance and Immunization.reaction

Immunization.reaction may be an indication of an allergy or intolerance. If this is deemed to be the case, a separate AllergyIntolerance record should be created to indicate it, as most systems will not query against past immunization.reactions.

Misuse

The allergy/intolerance list exists as a patient safety tool to inform decision support around ordering of medications and nutrition and to guide clinical treatment. Other reactions triggered by physical stimuli -- light, heat, cold, pressure, vibration, which may mimic allergic or intolerance reactions, should be recorded as Condition on the problem list, not using AllergyIntolerance.
Not to be used to record adverse events, including failures of clinical process, interventions or products. For example, abnormal use or mistakes/errors made in maladministration of an agent or substance, incorrect dosage, mislabeling, harm or injury caused by an intervention or procedure, overdose/poisoning, etc.
Not to be used as a proxy for an adverse event report. See above for how it may be used as one component of an adverse event report.
Not to be used for recording alerts. Alerts are handled using Flag or - where event-specific, DetectedIssue.
Not to be used for recording failed therapy.

9.1.3 References to this Resource

Resource References: AdverseEvent, ClinicalImpression, FamilyMemberHistory and NutritionOrder
Extension References: Procedure Caused By

Structure

Name	Flags	Card.	Type	Description & Constraints
AllergyIntolerance	TU		DomainResource	Allergy or Intolerance (generally: Risk of adverse reaction to a substance) Elements defined in Ancestors: id, meta, implicitRules, language, text, contained, extension, modifierExtension
identifier	Σ	0..*	Identifier	External ids for this item
clinicalStatus	?!Σ	0..1	CodeableConcept	active \| inactive \| resolved AllergyIntolerance Clinical Status Codes (Required)
verificationStatus	?!Σ	0..1	CodeableConcept	unconfirmed \| presumed \| confirmed \| refuted \| entered-in-error AllergyIntolerance Verification Status (Required)
type	Σ TU	0..1	CodeableConcept	allergy \| intolerance - Underlying mechanism (if known) AllergyIntoleranceType (Preferred)
category	Σ	0..*	code	food \| medication \| environment \| biologic AllergyIntoleranceCategory (Required)
criticality	Σ	0..1	code	low \| high \| unable-to-assess AllergyIntoleranceCriticality (Required)
code	Σ	0..1	CodeableConcept	Code that identifies the allergy or intolerance AllergyIntolerance Substance/Product, Condition and Negation Codes (Example)
patient	Σ	1..1	Reference(Patient)	Who the allergy or intolerance is for
encounter		0..1	Reference(Encounter)	Encounter when the allergy or intolerance was asserted
onset[x]		0..1		When allergy or intolerance was identified
onsetDateTime			dateTime
onsetAge			Age
onsetPeriod			Period
onsetRange			Range
onsetString			string
recordedDate		0..1	dateTime	Date allergy or intolerance was first recorded
participant	Σ	0..*	BackboneElement	Who or what participated in the activities related to the allergy or intolerance and how they were involved
function	Σ	0..1	CodeableConcept	Type of involvement ParticipationRoleType (Extensible)
actor	Σ	1..1	Reference(Practitioner \| PractitionerRole \| Patient \| RelatedPerson \| Device \| Organization \| CareTeam)	Who or what participated in the activities related to the allergy or intolerance
lastOccurrence		0..1	dateTime	Date(/time) of last known occurrence of a reaction
note		0..*	Annotation	Additional text not captured in other fields
reaction	TU	0..*	BackboneElement	Adverse Reaction Events linked to exposure to substance
substance		0..1	CodeableConcept	Specific substance or pharmaceutical product considered to be responsible for event Substance Code (Example)
manifestation		1..*	CodeableReference(Observation)	Clinical symptoms/signs associated with the Event SNOMED CT Clinical Findings (Example)
description		0..1	string	Description of the event as a whole
onset		0..1	dateTime	Date(/time) when manifestations showed
severity		0..1	code	mild \| moderate \| severe (of event as a whole) AllergyIntoleranceSeverity (Required)
exposureRoute		0..1	CodeableConcept	How the subject was exposed to the substance SNOMED CT Route Codes (Example)
note		0..*	Annotation	Text about event not captured in other fields
Documentation for this format

See the Extensions for this resource

UML Diagram (Legend)

XML Template

<AllergyIntolerance xmlns="http://hl7.org/fhir"> 
 <!-- from Resource: id, meta, implicitRules, and language -->
 <!-- from DomainResource: text, contained, extension, and modifierExtension -->
 <identifier><!-- 0..* Identifier External ids for this item --></identifier>
 <clinicalStatus><!-- 0..1 CodeableConcept active | inactive | resolved --></clinicalStatus>
 <verificationStatus><!-- 0..1 CodeableConcept unconfirmed | presumed | confirmed | refuted | entered-in-error --></verificationStatus>
 <type><!-- 0..1 CodeableConcept allergy | intolerance - Underlying mechanism (if known) --></type>
 <category value="[code]"/><!-- 0..* food | medication | environment | biologic -->
 <criticality value="[code]"/><!-- 0..1 low | high | unable-to-assess -->
 <code><!-- 0..1 CodeableConcept Code that identifies the allergy or intolerance --></code>
 <patient><!-- 1..1 Reference(Patient) Who the allergy or intolerance is for --></patient>
 <encounter><!-- 0..1 Reference(Encounter) Encounter when the allergy or intolerance was asserted --></encounter>
 <onset[x]><!-- 0..1 dateTime|Age|Period|Range|string When allergy or intolerance was identified --></onset[x]>
 <recordedDate value="[dateTime]"/><!-- 0..1 Date allergy or intolerance was first recorded -->
 <participant>  <!-- 0..* Who or what participated in the activities related to the allergy or intolerance and how they were involved -->
  <function><!-- 0..1 CodeableConcept Type of involvement --></function>
  <actor><!-- 1..1 Reference(CareTeam|Device|Organization|Patient|Practitioner|
    PractitionerRole|RelatedPerson) Who or what participated in the activities related to the allergy or intolerance --></actor>
 </participant>
 <lastOccurrence value="[dateTime]"/><!-- 0..1 Date(/time) of last known occurrence of a reaction -->
 <note><!-- 0..* Annotation Additional text not captured in other fields --></note>
 <reaction>  <!-- 0..* Adverse Reaction Events linked to exposure to substance -->
  <substance><!-- 0..1 CodeableConcept Specific substance or pharmaceutical product considered to be responsible for event --></substance>
  <manifestation><!-- 1..* CodeableReference(Observation) Clinical symptoms/signs associated with the Event --></manifestation>
  <description value="[string]"/><!-- 0..1 Description of the event as a whole -->
  <onset value="[dateTime]"/><!-- 0..1 Date(/time) when manifestations showed -->
  <severity value="[code]"/><!-- 0..1 mild | moderate | severe (of event as a whole) -->
  <exposureRoute><!-- 0..1 CodeableConcept How the subject was exposed to the substance --></exposureRoute>
  <note><!-- 0..* Annotation Text about event not captured in other fields --></note>
 </reaction>
</AllergyIntolerance>

JSON Template

{
  "resourceType" : "AllergyIntolerance",
  // from Resource: id, meta, implicitRules, and language
  // from DomainResource: text, contained, extension, and modifierExtension
  "identifier" : [{ Identifier }], // External ids for this item
  "clinicalStatus" : { CodeableConcept }, // active | inactive | resolved
  "verificationStatus" : { CodeableConcept }, // unconfirmed | presumed | confirmed | refuted | entered-in-error
  "type" : { CodeableConcept }, // allergy | intolerance - Underlying mechanism (if known)
  "category" : ["<code>"], // food | medication | environment | biologic
  "criticality" : "<code>", // low | high | unable-to-assess
  "code" : { CodeableConcept }, // Code that identifies the allergy or intolerance
  "patient" : { Reference(Patient) }, // R!  Who the allergy or intolerance is for
  "encounter" : { Reference(Encounter) }, // Encounter when the allergy or intolerance was asserted
  // onset[x]: When allergy or intolerance was identified. One of these 5:
  "onsetDateTime" : "<dateTime>",
  "onsetAge" : { Age },
  "onsetPeriod" : { Period },
  "onsetRange" : { Range },
  "onsetString" : "<string>",
  "recordedDate" : "<dateTime>", // Date allergy or intolerance was first recorded
  "participant" : [{ // Who or what participated in the activities related to the allergy or intolerance and how they were involved
    "function" : { CodeableConcept }, // Type of involvement
    "actor" : { Reference(CareTeam|Device|Organization|Patient|Practitioner|
    PractitionerRole|RelatedPerson) } // R!  Who or what participated in the activities related to the allergy or intolerance
  }],
  "lastOccurrence" : "<dateTime>", // Date(/time) of last known occurrence of a reaction
  "note" : [{ Annotation }], // Additional text not captured in other fields
  "reaction" : [{ // Adverse Reaction Events linked to exposure to substance
    "substance" : { CodeableConcept }, // Specific substance or pharmaceutical product considered to be responsible for event
    "manifestation" : [{ CodeableReference(Observation) }], // R!  Clinical symptoms/signs associated with the Event
    "description" : "<string>", // Description of the event as a whole
    "onset" : "<dateTime>", // Date(/time) when manifestations showed
    "severity" : "<code>", // mild | moderate | severe (of event as a whole)
    "exposureRoute" : { CodeableConcept }, // How the subject was exposed to the substance
    "note" : [{ Annotation }] // Text about event not captured in other fields
  }]
}

Turtle Template

@prefix fhir: <http://hl7.org/fhir/> .


[ a fhir:AllergyIntolerance;
  fhir:nodeRole fhir:treeRoot; # if this is the parser root

  # from Resource: .id, .meta, .implicitRules, and .language
  # from DomainResource: .text, .contained, .extension, and .modifierExtension
  fhir:AllergyIntolerance.identifier [ Identifier ], ... ; # 0..* External ids for this item
  fhir:AllergyIntolerance.clinicalStatus [ CodeableConcept ]; # 0..1 active | inactive | resolved
  fhir:AllergyIntolerance.verificationStatus [ CodeableConcept ]; # 0..1 unconfirmed | presumed | confirmed | refuted | entered-in-error
  fhir:AllergyIntolerance.type [ CodeableConcept ]; # 0..1 allergy | intolerance - Underlying mechanism (if known)
  fhir:AllergyIntolerance.category [ code ], ... ; # 0..* food | medication | environment | biologic
  fhir:AllergyIntolerance.criticality [ code ]; # 0..1 low | high | unable-to-assess
  fhir:AllergyIntolerance.code [ CodeableConcept ]; # 0..1 Code that identifies the allergy or intolerance
  fhir:AllergyIntolerance.patient [ Reference(Patient) ]; # 1..1 Who the allergy or intolerance is for
  fhir:AllergyIntolerance.encounter [ Reference(Encounter) ]; # 0..1 Encounter when the allergy or intolerance was asserted
  # AllergyIntolerance.onset[x] : 0..1 When allergy or intolerance was identified. One of these 5
    fhir:AllergyIntolerance.onsetDateTime [ dateTime ]
    fhir:AllergyIntolerance.onsetAge [ Age ]
    fhir:AllergyIntolerance.onsetPeriod [ Period ]
    fhir:AllergyIntolerance.onsetRange [ Range ]
    fhir:AllergyIntolerance.onsetString [ string ]
  fhir:AllergyIntolerance.recordedDate [ dateTime ]; # 0..1 Date allergy or intolerance was first recorded
  fhir:AllergyIntolerance.participant [ # 0..* Who or what participated in the activities related to the allergy or intolerance and how they were involved
    fhir:AllergyIntolerance.participant.function [ CodeableConcept ]; # 0..1 Type of involvement
    fhir:AllergyIntolerance.participant.actor [ Reference(CareTeam|Device|Organization|Patient|Practitioner|PractitionerRole|RelatedPerson) ]; # 1..1 Who or what participated in the activities related to the allergy or intolerance
  ], ...;
  fhir:AllergyIntolerance.lastOccurrence [ dateTime ]; # 0..1 Date(/time) of last known occurrence of a reaction
  fhir:AllergyIntolerance.note [ Annotation ], ... ; # 0..* Additional text not captured in other fields
  fhir:AllergyIntolerance.reaction [ # 0..* Adverse Reaction Events linked to exposure to substance
    fhir:AllergyIntolerance.reaction.substance [ CodeableConcept ]; # 0..1 Specific substance or pharmaceutical product considered to be responsible for event
    fhir:AllergyIntolerance.reaction.manifestation [ CodeableReference(Observation) ], ... ; # 1..* Clinical symptoms/signs associated with the Event
    fhir:AllergyIntolerance.reaction.description [ string ]; # 0..1 Description of the event as a whole
    fhir:AllergyIntolerance.reaction.onset [ dateTime ]; # 0..1 Date(/time) when manifestations showed
    fhir:AllergyIntolerance.reaction.severity [ code ]; # 0..1 mild | moderate | severe (of event as a whole)
    fhir:AllergyIntolerance.reaction.exposureRoute [ CodeableConcept ]; # 0..1 How the subject was exposed to the substance
    fhir:AllergyIntolerance.reaction.note [ Annotation ], ... ; # 0..* Text about event not captured in other fields
  ], ...;
]

Changes since R4

AllergyIntolerance

AllergyIntolerance.type

Type changed from code to CodeableConcept
Remove Binding http://hl7.org/fhir/ValueSet/allergy-intolerance-type|4.0.0 (required)
Remove Binding http://hl7.org/fhir/ValueSet/allergy-intolerance-type|4.0.0 (required)

AllergyIntolerance.participant

Added Element

AllergyIntolerance.participant.function

Added Element

AllergyIntolerance.participant.actor

Added Mandatory Element

AllergyIntolerance.reaction.manifestation

Type changed from CodeableConcept to CodeableReference
Type changed from CodeableConcept to CodeableReference

AllergyIntolerance.recorder

deleted

AllergyIntolerance.asserter

deleted

See the Full Difference for further information

This analysis is available as XML or JSON.

See R3 <--> R4 Conversion Maps (status = 3 tests that all execute ok. All tests pass round-trip testing and all r3 resources are valid.)

Structure

Name	Flags	Card.	Type	Description & Constraints
AllergyIntolerance	TU		DomainResource	Allergy or Intolerance (generally: Risk of adverse reaction to a substance) Elements defined in Ancestors: id, meta, implicitRules, language, text, contained, extension, modifierExtension
identifier	Σ	0..*	Identifier	External ids for this item
clinicalStatus	?!Σ	0..1	CodeableConcept	active \| inactive \| resolved AllergyIntolerance Clinical Status Codes (Required)
verificationStatus	?!Σ	0..1	CodeableConcept	unconfirmed \| presumed \| confirmed \| refuted \| entered-in-error AllergyIntolerance Verification Status (Required)
type	Σ TU	0..1	CodeableConcept	allergy \| intolerance - Underlying mechanism (if known) AllergyIntoleranceType (Preferred)
category	Σ	0..*	code	food \| medication \| environment \| biologic AllergyIntoleranceCategory (Required)
criticality	Σ	0..1	code	low \| high \| unable-to-assess AllergyIntoleranceCriticality (Required)
code	Σ	0..1	CodeableConcept	Code that identifies the allergy or intolerance AllergyIntolerance Substance/Product, Condition and Negation Codes (Example)
patient	Σ	1..1	Reference(Patient)	Who the allergy or intolerance is for
encounter		0..1	Reference(Encounter)	Encounter when the allergy or intolerance was asserted
onset[x]		0..1		When allergy or intolerance was identified
onsetDateTime			dateTime
onsetAge			Age
onsetPeriod			Period
onsetRange			Range
onsetString			string
recordedDate		0..1	dateTime	Date allergy or intolerance was first recorded
participant	Σ	0..*	BackboneElement	Who or what participated in the activities related to the allergy or intolerance and how they were involved
function	Σ	0..1	CodeableConcept	Type of involvement ParticipationRoleType (Extensible)
actor	Σ	1..1	Reference(Practitioner \| PractitionerRole \| Patient \| RelatedPerson \| Device \| Organization \| CareTeam)	Who or what participated in the activities related to the allergy or intolerance
lastOccurrence		0..1	dateTime	Date(/time) of last known occurrence of a reaction
note		0..*	Annotation	Additional text not captured in other fields
reaction	TU	0..*	BackboneElement	Adverse Reaction Events linked to exposure to substance
substance		0..1	CodeableConcept	Specific substance or pharmaceutical product considered to be responsible for event Substance Code (Example)
manifestation		1..*	CodeableReference(Observation)	Clinical symptoms/signs associated with the Event SNOMED CT Clinical Findings (Example)
description		0..1	string	Description of the event as a whole
onset		0..1	dateTime	Date(/time) when manifestations showed
severity		0..1	code	mild \| moderate \| severe (of event as a whole) AllergyIntoleranceSeverity (Required)
exposureRoute		0..1	CodeableConcept	How the subject was exposed to the substance SNOMED CT Route Codes (Example)
note		0..*	Annotation	Text about event not captured in other fields
Documentation for this format

See the Extensions for this resource

UML Diagram (Legend)

XML Template

<AllergyIntolerance xmlns="http://hl7.org/fhir"> 
 <!-- from Resource: id, meta, implicitRules, and language -->
 <!-- from DomainResource: text, contained, extension, and modifierExtension -->
 <identifier><!-- 0..* Identifier External ids for this item --></identifier>
 <clinicalStatus><!-- 0..1 CodeableConcept active | inactive | resolved --></clinicalStatus>
 <verificationStatus><!-- 0..1 CodeableConcept unconfirmed | presumed | confirmed | refuted | entered-in-error --></verificationStatus>
 <type><!-- 0..1 CodeableConcept allergy | intolerance - Underlying mechanism (if known) --></type>
 <category value="[code]"/><!-- 0..* food | medication | environment | biologic -->
 <criticality value="[code]"/><!-- 0..1 low | high | unable-to-assess -->
 <code><!-- 0..1 CodeableConcept Code that identifies the allergy or intolerance --></code>
 <patient><!-- 1..1 Reference(Patient) Who the allergy or intolerance is for --></patient>
 <encounter><!-- 0..1 Reference(Encounter) Encounter when the allergy or intolerance was asserted --></encounter>
 <onset[x]><!-- 0..1 dateTime|Age|Period|Range|string When allergy or intolerance was identified --></onset[x]>
 <recordedDate value="[dateTime]"/><!-- 0..1 Date allergy or intolerance was first recorded -->
 <participant>  <!-- 0..* Who or what participated in the activities related to the allergy or intolerance and how they were involved -->
  <function><!-- 0..1 CodeableConcept Type of involvement --></function>
  <actor><!-- 1..1 Reference(CareTeam|Device|Organization|Patient|Practitioner|
    PractitionerRole|RelatedPerson) Who or what participated in the activities related to the allergy or intolerance --></actor>
 </participant>
 <lastOccurrence value="[dateTime]"/><!-- 0..1 Date(/time) of last known occurrence of a reaction -->
 <note><!-- 0..* Annotation Additional text not captured in other fields --></note>
 <reaction>  <!-- 0..* Adverse Reaction Events linked to exposure to substance -->
  <substance><!-- 0..1 CodeableConcept Specific substance or pharmaceutical product considered to be responsible for event --></substance>
  <manifestation><!-- 1..* CodeableReference(Observation) Clinical symptoms/signs associated with the Event --></manifestation>
  <description value="[string]"/><!-- 0..1 Description of the event as a whole -->
  <onset value="[dateTime]"/><!-- 0..1 Date(/time) when manifestations showed -->
  <severity value="[code]"/><!-- 0..1 mild | moderate | severe (of event as a whole) -->
  <exposureRoute><!-- 0..1 CodeableConcept How the subject was exposed to the substance --></exposureRoute>
  <note><!-- 0..* Annotation Text about event not captured in other fields --></note>
 </reaction>
</AllergyIntolerance>

JSON Template

{
  "resourceType" : "AllergyIntolerance",
  // from Resource: id, meta, implicitRules, and language
  // from DomainResource: text, contained, extension, and modifierExtension
  "identifier" : [{ Identifier }], // External ids for this item
  "clinicalStatus" : { CodeableConcept }, // active | inactive | resolved
  "verificationStatus" : { CodeableConcept }, // unconfirmed | presumed | confirmed | refuted | entered-in-error
  "type" : { CodeableConcept }, // allergy | intolerance - Underlying mechanism (if known)
  "category" : ["<code>"], // food | medication | environment | biologic
  "criticality" : "<code>", // low | high | unable-to-assess
  "code" : { CodeableConcept }, // Code that identifies the allergy or intolerance
  "patient" : { Reference(Patient) }, // R!  Who the allergy or intolerance is for
  "encounter" : { Reference(Encounter) }, // Encounter when the allergy or intolerance was asserted
  // onset[x]: When allergy or intolerance was identified. One of these 5:
  "onsetDateTime" : "<dateTime>",
  "onsetAge" : { Age },
  "onsetPeriod" : { Period },
  "onsetRange" : { Range },
  "onsetString" : "<string>",
  "recordedDate" : "<dateTime>", // Date allergy or intolerance was first recorded
  "participant" : [{ // Who or what participated in the activities related to the allergy or intolerance and how they were involved
    "function" : { CodeableConcept }, // Type of involvement
    "actor" : { Reference(CareTeam|Device|Organization|Patient|Practitioner|
    PractitionerRole|RelatedPerson) } // R!  Who or what participated in the activities related to the allergy or intolerance
  }],
  "lastOccurrence" : "<dateTime>", // Date(/time) of last known occurrence of a reaction
  "note" : [{ Annotation }], // Additional text not captured in other fields
  "reaction" : [{ // Adverse Reaction Events linked to exposure to substance
    "substance" : { CodeableConcept }, // Specific substance or pharmaceutical product considered to be responsible for event
    "manifestation" : [{ CodeableReference(Observation) }], // R!  Clinical symptoms/signs associated with the Event
    "description" : "<string>", // Description of the event as a whole
    "onset" : "<dateTime>", // Date(/time) when manifestations showed
    "severity" : "<code>", // mild | moderate | severe (of event as a whole)
    "exposureRoute" : { CodeableConcept }, // How the subject was exposed to the substance
    "note" : [{ Annotation }] // Text about event not captured in other fields
  }]
}

Turtle Template

@prefix fhir: <http://hl7.org/fhir/> .


[ a fhir:AllergyIntolerance;
  fhir:nodeRole fhir:treeRoot; # if this is the parser root

  # from Resource: .id, .meta, .implicitRules, and .language
  # from DomainResource: .text, .contained, .extension, and .modifierExtension
  fhir:AllergyIntolerance.identifier [ Identifier ], ... ; # 0..* External ids for this item
  fhir:AllergyIntolerance.clinicalStatus [ CodeableConcept ]; # 0..1 active | inactive | resolved
  fhir:AllergyIntolerance.verificationStatus [ CodeableConcept ]; # 0..1 unconfirmed | presumed | confirmed | refuted | entered-in-error
  fhir:AllergyIntolerance.type [ CodeableConcept ]; # 0..1 allergy | intolerance - Underlying mechanism (if known)
  fhir:AllergyIntolerance.category [ code ], ... ; # 0..* food | medication | environment | biologic
  fhir:AllergyIntolerance.criticality [ code ]; # 0..1 low | high | unable-to-assess
  fhir:AllergyIntolerance.code [ CodeableConcept ]; # 0..1 Code that identifies the allergy or intolerance
  fhir:AllergyIntolerance.patient [ Reference(Patient) ]; # 1..1 Who the allergy or intolerance is for
  fhir:AllergyIntolerance.encounter [ Reference(Encounter) ]; # 0..1 Encounter when the allergy or intolerance was asserted
  # AllergyIntolerance.onset[x] : 0..1 When allergy or intolerance was identified. One of these 5
    fhir:AllergyIntolerance.onsetDateTime [ dateTime ]
    fhir:AllergyIntolerance.onsetAge [ Age ]
    fhir:AllergyIntolerance.onsetPeriod [ Period ]
    fhir:AllergyIntolerance.onsetRange [ Range ]
    fhir:AllergyIntolerance.onsetString [ string ]
  fhir:AllergyIntolerance.recordedDate [ dateTime ]; # 0..1 Date allergy or intolerance was first recorded
  fhir:AllergyIntolerance.participant [ # 0..* Who or what participated in the activities related to the allergy or intolerance and how they were involved
    fhir:AllergyIntolerance.participant.function [ CodeableConcept ]; # 0..1 Type of involvement
    fhir:AllergyIntolerance.participant.actor [ Reference(CareTeam|Device|Organization|Patient|Practitioner|PractitionerRole|RelatedPerson) ]; # 1..1 Who or what participated in the activities related to the allergy or intolerance
  ], ...;
  fhir:AllergyIntolerance.lastOccurrence [ dateTime ]; # 0..1 Date(/time) of last known occurrence of a reaction
  fhir:AllergyIntolerance.note [ Annotation ], ... ; # 0..* Additional text not captured in other fields
  fhir:AllergyIntolerance.reaction [ # 0..* Adverse Reaction Events linked to exposure to substance
    fhir:AllergyIntolerance.reaction.substance [ CodeableConcept ]; # 0..1 Specific substance or pharmaceutical product considered to be responsible for event
    fhir:AllergyIntolerance.reaction.manifestation [ CodeableReference(Observation) ], ... ; # 1..* Clinical symptoms/signs associated with the Event
    fhir:AllergyIntolerance.reaction.description [ string ]; # 0..1 Description of the event as a whole
    fhir:AllergyIntolerance.reaction.onset [ dateTime ]; # 0..1 Date(/time) when manifestations showed
    fhir:AllergyIntolerance.reaction.severity [ code ]; # 0..1 mild | moderate | severe (of event as a whole)
    fhir:AllergyIntolerance.reaction.exposureRoute [ CodeableConcept ]; # 0..1 How the subject was exposed to the substance
    fhir:AllergyIntolerance.reaction.note [ Annotation ], ... ; # 0..* Text about event not captured in other fields
  ], ...;
]

Changes since Release 4

AllergyIntolerance

AllergyIntolerance.type

Type changed from code to CodeableConcept
Remove Binding http://hl7.org/fhir/ValueSet/allergy-intolerance-type|4.0.0 (required)
Remove Binding http://hl7.org/fhir/ValueSet/allergy-intolerance-type|4.0.0 (required)

AllergyIntolerance.participant

Added Element

AllergyIntolerance.participant.function

Added Element

AllergyIntolerance.participant.actor

Added Mandatory Element

AllergyIntolerance.reaction.manifestation

Type changed from CodeableConcept to CodeableReference
Type changed from CodeableConcept to CodeableReference

AllergyIntolerance.recorder

deleted

AllergyIntolerance.asserter

deleted

See the Full Difference for further information

This analysis is available as XML or JSON.

See R3 <--> R4 Conversion Maps (status = 3 tests that all execute ok. All tests pass round-trip testing and all r3 resources are valid.)

Additional definitions: Master Definition XML + JSON, XML Schema/Schematron + JSON Schema, ShEx (for Turtle) + see the extensions, the spreadsheet version & the dependency analysis

9.1.4.1 Terminology Bindings

Path	Definition	Type	Reference
AllergyIntolerance.clinicalStatus	Preferred value set for AllergyIntolerance Clinical Status.	Required	AllergyIntoleranceClinicalStatusCodes
AllergyIntolerance.verificationStatus	The verification status to support or decline the clinical status of the allergy or intolerance.	Required	AllergyIntoleranceVerificationStatus
AllergyIntolerance.type	Identification of the underlying physiological mechanism for a Reaction Risk.	Preferred	AllergyIntoleranceType
AllergyIntolerance.category	Category of an identified substance associated with allergies or intolerances.	Required	AllergyIntoleranceCategory
AllergyIntolerance.criticality	Estimate of the potential clinical harm, or seriousness, of a reaction to an identified substance.	Required	AllergyIntoleranceCriticality
AllergyIntolerance.code	This value set includes concept codes for specific substances/pharmaceutical products, allergy or intolerance conditions, and negation/exclusion codes to specify the absence of specific types of allergies or intolerances.	Example	SubstanceProductAndConditionAndNegationCodes
AllergyIntolerance.participant.function	This FHIR value set is comprised of Actor participation Type codes, which can be used to value FHIR agents, actors, and other role elements. The codes are intended to express how the agent participated in some activity. Sometimes refered to the agent functional-role relative to the activity.	Extensible	ParticipationRoleType
AllergyIntolerance.reaction.substance	This value set contains concept codes for specific substances. It includes codes from SNOMED where concept is-a 105590001 (Substance (substance))	Example	SubstanceCode
AllergyIntolerance.reaction.manifestation	This value set includes all the "Clinical finding" SNOMED CT codes - concepts where concept is-a 404684003 (Clinical finding (finding)).	Example	SNOMEDCTClinicalFindings
AllergyIntolerance.reaction.severity	Clinical assessment of the severity of a reaction event as a whole, potentially considering multiple different manifestations.	Required	AllergyIntoleranceSeverity
AllergyIntolerance.reaction.exposureRoute	This value set includes all Route codes from SNOMED CT - provided as an exemplar.	Example	SNOMEDCTRouteCodes

Path

Definition

Type

Reference

AllergyIntolerance.clinicalStatus

Preferred value set for AllergyIntolerance Clinical Status.

Required

AllergyIntoleranceClinicalStatusCodes

AllergyIntolerance.verificationStatus

The verification status to support or decline the clinical status of the allergy or intolerance.

Required

AllergyIntoleranceVerificationStatus

AllergyIntolerance.type

Identification of the underlying physiological mechanism for a Reaction Risk.

Preferred

AllergyIntoleranceType

AllergyIntolerance.category

Category of an identified substance associated with allergies or intolerances.

Required

AllergyIntoleranceCategory

AllergyIntolerance.criticality

Estimate of the potential clinical harm, or seriousness, of a reaction to an identified substance.

Required

AllergyIntoleranceCriticality

AllergyIntolerance.code

This value set includes concept codes for specific substances/pharmaceutical products, allergy or intolerance conditions, and negation/exclusion codes to specify the absence of specific types of allergies or intolerances.

Example

SubstanceProductAndConditionAndNegationCodes

AllergyIntolerance.participant.function

This FHIR value set is comprised of Actor participation Type codes, which can be used to value FHIR agents, actors, and other role elements. The codes are intended to express how the agent participated in some activity. Sometimes refered to the agent functional-role relative to the activity.

Extensible

ParticipationRoleType

AllergyIntolerance.reaction.substance

This value set contains concept codes for specific substances. It includes codes from SNOMED icon where concept is-a 105590001 (Substance (substance))

Example

SubstanceCode

AllergyIntolerance.reaction.manifestation

This value set includes all the "Clinical finding" SNOMED CT icon codes - concepts where concept is-a 404684003 (Clinical finding (finding)).

Example

SNOMEDCTClinicalFindings

AllergyIntolerance.reaction.severity

Clinical assessment of the severity of a reaction event as a whole, potentially considering multiple different manifestations.

Required

AllergyIntoleranceSeverity

AllergyIntolerance.reaction.exposureRoute

This value set includes all Route codes from SNOMED CT - provided as an exemplar.

Example

SNOMEDCTRouteCodes

9.1.4.2 Negated Allergies and Intolerances

It is important to differentiate between affirmatively stating that a patient has no known allergies versus either not including allergies in the record (for example an episodic document where the allergies are not considered relevant to the document); or asserting that allergies were not reviewed and are unknown.

Allergies with the verificationStatus "entered-in-error" indicates that the allergy or intolerance statement is entered by mistake and hence invalid.

Allergies with the verificationStatus "refuted" must be displayed to indicate that a reaction to a substance has been ruled out with the high level of clinical certainty (e.g. additional testing, re-challenging). When the allergy or intolerance is refuted, other elements may be retained for legal reasons, but those other elements are no longer clinically relevant.

Prior to adding a new allergy/intolerance, a list of existing negated and refuted reactions should be reviewed and reconciled.

Allergies Not Reviewed, Not Asked

When a sending system does not have any information about allergies being reviewed or the statement is about allergies not being asked yet, then the List resource should be used to indicate the List.emptyReason.code="notasked".

Allergies Reviewed, None Identified

Systems may use the List.emptyReason when a statement is about the full scope of the list (i.e. the patient has no known allergies or intolerances of any type). However, it is generally preferred to use an AllergyIntolerance.code such as "No known allergies" (e.g., SNOMED CT: 716186003 |No known allergy (situation)|), so that all allergy data will be available and queryable from AllergyIntolerance resource instances. Negated AllergyIntolerance instances are also typically used when the record is more fine-grained (e.g. no drug allergies, no food allergies, no nut allergies, etc.).

However, it is possible to include negation statements that apply at the level of the whole list and it is also possible to have separate lists for things like medication allergies vs. food allergies, where that is appropriate to the architecture. Also note that care should be used when adding new AllergyIntolerances to a list to ensure that any negation statements that are voided by the addition of a new record are removed from the list. E.g. If the list contains a "no known food allergies" record and you add an "intolerance to grape flavor" record, then be sure you remove the "no known food allergies" record.

The substanceExposureRisk extension is also available for use as a more completely structured and flexible alternative to the 'code' element for representing positive and negative allergy and intolerance statements (either the 'code' element or the substanceExposureRisk extension may be used, but not both).

No Known Allergies

<?xml version="1.0" encoding="UTF-8"?>
<AllergyIntolerance xmlns="http://hl7.org/fhir">
  <id value="nka"/> 
  <text> 
	<status value="generated"/> 
	<div xmlns="http://www.w3.org/1999/xhtml">
	  <p> No Known Allergy</p> 
	  <p> recordedDate:2015-08-06</p> 
	</div>    
  </text> 
		 
  <code> 
	<coding> 
	  <system value="http://snomed.info/sct"/> 
	  <code value="716186003"/> 
	  <display value="No Known Allergy (situation)"/> 
	</coding> 
	<text value="NKA"/> 
  </code> 

  <patient> 
	<reference value="Patient/mom"/> 
  </patient> 

  <!--   the date that this entry was recorded   -->  
  <recordedDate value="2015-08-06T15:37:31-06:00"/> 
	  
  <!--   who made the record / last updated it   -->
  <recorder> 
	<reference value="Practitioner/example"/> 
  </recorder>   
</AllergyIntolerance>

No Known Allergies, using List.emptyReason (discouraged)

  <List xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hl7.org/fhir ..\..\schema\list.xsd">
 <id value="example-empty-allergy"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p> The patient is not aware of any allergies.</p>
    </div>
  </text>
<code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="52472-8"/>
      <display value="Allergies and Adverse Drug Reactions"/>
    </coding>
    <text value="Current Allergy List"/>
  </code>
  <source>
    <reference value="Patient/example"/>
  </source>
  <status value="current"/>
  <date value="2012-11-26T07:30:23+11:00"/>
  <mode value="snapshot"/>
  <emptyReason>
    <coding>
      <system value="http://hl7.org/fhir/special-values"/>
      <code value="nil-known"/>
      <display value="Nil Known"/>
    </coding>
    <text value="The patient is not aware of any allergies."/>
  </emptyReason>
</List>

No Known Food Allergies and Medication Allergy List

  <?xml version="1.0" encoding="UTF-8"?>
<List xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hl7.org/fhir ..\..\schema\list.xsd">
  <id value="current-allergies"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p>Patient Peter Chalmers, DOB = Dec 25, 1974, MRN = 12345 (Acme Healthcare) has the following allergies</p>
      <ul>
        <li>No known food allergies</li>
        <li>Allergenic extract, penicillin (high)</li>
      </ul>
    </div>
  </text>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="52472-8"/>
      <display value="Allergies and Adverse Drug Reactions"/>
    </coding>
    <text value="Current Allergy List"/>
  </code>
  <source>
    <reference value="Patient/example"/>
  </source>
  <status value="current"/>
  <date value="2015-07-14T23:10:23+11:00"/>
  <mode value="snapshot"/>
  <entry>
    <item> 
      <reference value="AllergyIntolerance/nofoodallergies"/>
    </item>
  </entry>
  <entry>
    <item> 
      <reference value="AllergyIntolerance/penicillin"/>
    </item>
  </entry>  
</List>

If a new allergy is discovered, the negated allergy record must be updated with the "refuted" verificationStatus - to ensure that systems referring to this record are aware that this is no longer true.

9.1.4.3 Use of AllergyIntolerance.criticality

Systems that only support one notion will have to determine whether what they're capturing is criticality or severity and map to the appropriate place. Criticality refers to the likelihood the allergy/intolerance could result in significant harm. Severity refers to the degree of manifestation of the reaction symptom. Moderate breathing difficulty would have high criticality while a severe rash would have low criticality. Severity is specific to a particular reaction occurrence.

For systems that only track generic reaction characteristics rather than a specific reaction will provide guidance to use the "reaction" structure and simply provide no date.

9.1.4.4 References

Adverse Reaction, draft archetype, National eHealth Transition Authority [Internet]. NEHTA Clinical Knowledge Manager. Authored: 08 Nov 2010. Available at: http://dcm.nehta.org.au/ckm/OKM.html#showarchetype_1013.1.868_7 (accessed Jan 16, 2012).
Allergy and Intolerance Domain Analysis Model, Release 1, HL7 [Internet]. Publication pending, expected August 2014; Available at http://www.hl7.org/implement/standards/product_brief.cfm?product_id=308 (accessed 06 July 2014).
Allergy, clinical element model, GE/Intermountain Healthcare. Clinical Element Model Search. Available at: http://intermountainhealthcare.org/cem/Pages/Detail.aspx?NCID=520861661&k=allergy (accessed Jan 16, 2012).
Edwards IR, Aronson JK. Adverse drug reactions: definitions, diagnosis, and management. Lancet. 2000 Oct 7;356(9237):1255-9. PubMed PMID: 11072960.
Horsfield P, Sibeko S. Representation in Electronic Patient Records of Allergic Reactions, Adverse Reactions, and Intolerance of Pharmaceutical Products [Internet]. London, UK: National Health Service; 2006 Sep 07 [cited 2011 Jun 21]; Available at https://svn.connectingforhealth.nhs.uk/svn/public/nhscontentmodels/TRUNK/ref/NPfIT/Allergy_ADR_Intolerance%20v%201.2Final.doc .
Long R, Bentley S. SCG Guidance on the Representation of Allergies and Adverse Reaction Information Using NHS Message Templates [Internet]. London, UK: National Health Service; 2008 Apr 30 [cited 2011 Jun 21]; Available at http://www.connectingforhealth.nhs.uk/systemsandservices/data/scg/scg0001.pdf .
Microsoft. Design Guidance: Displaying Adverse Drug Reaction Risks [Internet]. 2009 January 28 [cited 2011 Jun 21]; Available at www.mscui.net/DesignGuide/DisplayingAllergies.aspx .
Microsoft. Design Guidance: Recording Adverse Drug Reaction Risks [Internet]. 2009 March 27 [cited 2011 Jun 21]; Available at www.mscui.net/DesignGuide/RecordingAllergies.aspx .
Mosby. Mosby's Pocket Dictionary of Medicine, Nursing and Health Professions. 6th Edition. USA: Mosby Elsevier; 2010
National E-Health Transition Authority. Adverse Reactions (Data Specifications) Version 1.1 [Internet]. Sydney, Australia: NEHTA; 2008 Feb 29 [cited 2011 Jun 21]; Available at http://www.nehta.gov.au/component/docman/doc_download/453-adverse-reaction-data-specification-v11
Riedl MA, Casillas AM. Adverse drug reactions: types and treatment options. Am Fam Physician. 2003 Nov 1;68(9):1781-90. Review. PubMed PMID: 14620598.
Royal Australian College of General Practitioners. Fact Sheet: Allergies & Adverse Reactions (Draft). 2010.
Thien FC. Drug hypersensitivity. Med J Aust. 2006 Sep 18;185(6):333-8. Review. PubMed PMID: 16999678.
Uppsala Monitoring Centre (WHO): http://www.who-umc.org/
European Medicines Agency: http://www.ema.europa.eu/ema/
DIRECTIVE 2010/84/EU OF THE EUROPEAN PARLIAMENT AND OF THE COUNCIL, of 15 December 2010, amending, as regards pharmacovigilance, Directive 2001/83/EC on the Community code relating to medicinal products for human use: http://ec.europa.eu/health/files/eudralex/vol-1/dir_2010_84/dir_2010_84_en.pdf

9.1.5 Search Parameters

Search parameters for this resource. The common parameters also apply. See Searching for more information about searching in REST, messaging, and services.

Name	Type	Description	Expression	In Common
category	token	food \| medication \| environment \| biologic	AllergyIntolerance.category
clinical-status	token	active \| inactive \| resolved	AllergyIntolerance.clinicalStatus
code	token	Code that identifies the allergy or intolerance	AllergyIntolerance.code \| AllergyIntolerance.reaction.substance	13 Resources
criticality	token	low \| high \| unable-to-assess	AllergyIntolerance.criticality
date	date	Date first version of the resource instance was recorded	AllergyIntolerance.recordedDate	17 Resources
identifier	token	External ids for this item	AllergyIntolerance.identifier	30 Resources
last-date	date	Date(/time) of last known occurrence of a reaction	AllergyIntolerance.lastOccurrence
manifestation-code	token	Clinical symptoms/signs associated with the Event	AllergyIntolerance.reaction.manifestation.concept
manifestation-reference	reference	Clinical symptoms/signs associated with the Event	AllergyIntolerance.reaction.manifestation.reference
participant	reference	Who or what participated in the activities related to the allergy or intolerance	AllergyIntolerance.participant.actor (Practitioner, Organization, CareTeam, Device, Patient, PractitionerRole, RelatedPerson)
patient	reference	Who the sensitivity is for	AllergyIntolerance.patient (Patient)	33 Resources
route	token	How the subject was exposed to the substance	AllergyIntolerance.reaction.exposureRoute
severity	token	mild \| moderate \| severe (of event as a whole)	AllergyIntolerance.reaction.severity
type	token	allergy \| intolerance - Underlying mechanism (if known)	AllergyIntolerance.type	6 Resources
verification-status	token	unconfirmed \| presumed \| confirmed \| refuted \| entered-in-error	AllergyIntolerance.verificationStatus