Release 5 Ballot

This page is part of the FHIR Specification (v5.0.0-ballot: FHIR R5 Ballot Preview). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

4.4.1.690 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Clinical Genomics Work Group Maturity Level: 1Trial Use Use Context: Not yet ready for Production use, Not yet ready for Production use

This is a value set defined by the FHIR project.

Summary

Defining URL:http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
Version:5.0.0-ballot
Name:GenomicStudyDataFormat
Title:GenomicStudyDataFormat
Status:draft
Definition:

The data formats relevant to Genomic Study analysis.

Committee:Clinical Genomics Work Group
OID:2.16.840.1.113883.4.642.3.3084 (for OID based terminology systems)
Flags:Experimental

This value set is used in the following places:

4.4.1.690.1 Content Logical Definition

 

4.4.1.690.2 Expansion

This expansion generated 07 Sep 2022

This value set contains 40 concepts

Expansion based on GenomicStudyDataFormat v5.0.0-ballot (CodeSystem)

CodeSystemDisplay
  bamhttp://hl7.org/fhir/genomicstudy-dataformatBAM
  bedhttp://hl7.org/fhir/genomicstudy-dataformatBED
  bedpehttp://hl7.org/fhir/genomicstudy-dataformatBEDPE
  bedgraphhttp://hl7.org/fhir/genomicstudy-dataformatBedGraph
  bigbedhttp://hl7.org/fhir/genomicstudy-dataformatbigBed
  bigWighttp://hl7.org/fhir/genomicstudy-dataformatbigWig
  birdsuite-fileshttp://hl7.org/fhir/genomicstudy-dataformatBirdsuite-Files
  broadpeakhttp://hl7.org/fhir/genomicstudy-dataformatbroadPeak
  cbshttp://hl7.org/fhir/genomicstudy-dataformatCBS
  chemical-reactivity-probing-profileshttp://hl7.org/fhir/genomicstudy-dataformatChemical-Reactivity-Probing-Profiles
  chrom-sizeshttp://hl7.org/fhir/genomicstudy-dataformatchrom-sizes
  cnhttp://hl7.org/fhir/genomicstudy-dataformatCN
  custom-file-formatshttp://hl7.org/fhir/genomicstudy-dataformatCustom-File-Formats
  cytobandhttp://hl7.org/fhir/genomicstudy-dataformatCytoband
  fastahttp://hl7.org/fhir/genomicstudy-dataformatFASTA
  gcthttp://hl7.org/fhir/genomicstudy-dataformatGCT
  cramhttp://hl7.org/fhir/genomicstudy-dataformatCRAM
  genepredhttp://hl7.org/fhir/genomicstudy-dataformatgenePred
  gff-gtfhttp://hl7.org/fhir/genomicstudy-dataformatGFF/GTF
  gistichttp://hl7.org/fhir/genomicstudy-dataformatGISTIC
  gobyhttp://hl7.org/fhir/genomicstudy-dataformatGoby
  gwashttp://hl7.org/fhir/genomicstudy-dataformatGWAS
  igvhttp://hl7.org/fhir/genomicstudy-dataformatIGV
  lohhttp://hl7.org/fhir/genomicstudy-dataformatLOH
  maf-multiple-alignment-formathttp://hl7.org/fhir/genomicstudy-dataformatMAF-Multiple Alignment Format
  maf-mutation-annotation-formathttp://hl7.org/fhir/genomicstudy-dataformatMAF-Mutation-Annotation-Format
  merged-bam-filehttp://hl7.org/fhir/genomicstudy-dataformatMerged BAM File
  muthttp://hl7.org/fhir/genomicstudy-dataformatMUT
  narrowpeakhttp://hl7.org/fhir/genomicstudy-dataformatnarrowPeak
  pslhttp://hl7.org/fhir/genomicstudy-dataformatPSL
  reshttp://hl7.org/fhir/genomicstudy-dataformatRES
  rna-secondary-structure-formatshttp://hl7.org/fhir/genomicstudy-dataformatRNA-Secondary-Structure-Formats
  samhttp://hl7.org/fhir/genomicstudy-dataformatSAM
  sample-info-attributes-filehttp://hl7.org/fhir/genomicstudy-dataformatSample-Info-Attributes-file
  seghttp://hl7.org/fhir/genomicstudy-dataformatSEG
  tdfhttp://hl7.org/fhir/genomicstudy-dataformatTDF
  track-linehttp://hl7.org/fhir/genomicstudy-dataformatTrack Line
  type-linehttp://hl7.org/fhir/genomicstudy-dataformatType Line
  vcfhttp://hl7.org/fhir/genomicstudy-dataformatVCF
  wighttp://hl7.org/fhir/genomicstudy-dataformatWIG

 

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

LvlA few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
SourceThe source of the definition of the code (when the value set draws in codes defined elsewhere)
CodeThe code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
DisplayThe display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
DefinitionAn explanation of the meaning of the concept
CommentsAdditional notes about how to use the code