MolecularSequence example for patient with breast cancer gene variant

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:MolecularSequence;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "breastcancer"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: MolecularSequence</b><a name=\"breastcancer\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource MolecularSequence &quot;breastcancer&quot; </p></div><p><b>type</b>: rna</p><p><b>subject</b>: <a href=\"todo.html\">Patient/brcapat</a></p><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 0-based interval counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30100-4)</span></p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (#NM_000059.3)</span></td><td>101488058</td><td>101499444</td></tr></table><h3>Edits</h3><table class=\"grid\"><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ReplacementSequence</b></td><td><b>ReplacedSequence</b></td></tr><tr><td>*</td><td>32316186</td><td>32316187</td><td>A</td><td>C</td></tr></table></blockquote></div>"
  ];
  fhir:MolecularSequence.type [ fhir:value "rna"];
  fhir:MolecularSequence.subject [
     fhir:Reference.reference [ fhir:value "Patient/brcapat" ]
  ];
  fhir:MolecularSequence.relative [
     fhir:index 0;
     fhir:MolecularSequence.relative.coordinateSystem [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:LA30100-4;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "LA30100-4" ];
         fhir:Coding.display [ fhir:value "0-based interval counting" ]
       ]
     ];
     fhir:MolecularSequence.relative.startingSequence [
       fhir:MolecularSequence.relative.startingSequence.sequenceCodeableConcept [
         fhir:CodeableConcept.coding [
           fhir:index 0;
           fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore/" ];
           fhir:Coding.code [ fhir:value "NM_000059.3" ];
           fhir:Coding.display [ fhir:value "Homo sapiens BRCA2, DNA repair associated (BRCA2), mRNA" ]
         ]
       ];
       fhir:MolecularSequence.relative.startingSequence.windowStart [ fhir:value "101488058"^^xsd:integer ];
       fhir:MolecularSequence.relative.startingSequence.windowEnd [ fhir:value "101499444"^^xsd:integer ]
     ];
     fhir:MolecularSequence.relative.edit [
       fhir:index 0;
       fhir:MolecularSequence.relative.edit.start [ fhir:value "32316186"^^xsd:integer ];
       fhir:MolecularSequence.relative.edit.end [ fhir:value "32316187"^^xsd:integer ];
       fhir:MolecularSequence.relative.edit.replacementSequence [ fhir:value "A" ];
       fhir:MolecularSequence.relative.edit.replacedSequence [ fhir:value "C" ]
     ]
  ]] .

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------