Observation-example-genetics-1.json

Genetics example 1

{
  "resourceType": "Observation",
  "id": "example-genetics-1",
  "text": {
    "status": "extensions",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>Gene</b>: <span>EGFR</span></p><p><b>DNARegionName</b>: Exon 21</p><p><b>GenomicSourceClass</b>: <span>somatic</span></p><p/><p><b>code</b>: <span>Genetic analysis master panel-- This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result.</span></p><p><b>subject</b>: <a>Molecular Lab Patient ID: HOSP-23456. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>issued</b>: 4 Apr. 2013, 1:30:10 am</p><p><b>performer</b>: <a>Molecular Diagnostics Laboratory. Generated Summary: id: 23; active; Adam Careful </a></p><p><b>value</b>: <span>Positive</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "3236",
            "display": "EGFR"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName",
      "valueString": "Exon 21"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA6684-0",
            "display": "somatic"
          }
        ]
      }
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "55233-1",
        "display": "Genetic analysis master panel-- This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result."
      }
    ]
  },
  "subject": {
    "reference": "Patient/example",
    "display": "Molecular Lab Patient ID: HOSP-23456"
  },
  "issued": "2013-04-03T15:30:10+01:00",
  "performer": [
    {
      "reference": "Practitioner/example",
      "display": "Molecular Diagnostics Laboratory"
    }
  ],
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "10828004",
        "display": "Positive"
      }
    ]
  },
  "specimen": {
    "reference": "Specimen/genetics-example1-somatic",
    "display": "Molecular Specimen ID: MLD45-Z4-1234"
  }
}