Observation-example-genetics-1.json

Genetics example 1

{
  "resourceType": "Observation",
  "id": "example-genetics-1",
  "text": {
    "status": "extensions",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;example-genetics-1&quot; </p></div><p><b>Gene</b>: EGFR <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-hgnc.html\">HUGO Gene Nomenclature</a>#3236)</span></p><p><b>DNARegionName</b>: Exon 21</p><p><b>GenomicSourceClass</b>: somatic <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA6684-0)</span></p><p><b>status</b>: final</p><p><b>code</b>: The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genetic analysis master panel-- This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result. <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#55233-1)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example: Molecular Lab Patient ID: HOSP-23456</a> &quot;Peter CHALMERS&quot;</p><p><b>effective</b>: 2013-04-03T15:30:10+01:00</p><p><b>performer</b>: <a href=\"practitioner-example.html\">Practitioner/example: Molecular Diagnostics Laboratory</a> &quot;Adam CAREFUL&quot;</p><p><b>value</b>: Positive <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#10828004)</span></p><p><b>device</b>: <a href=\"device-example.html\">Device/example</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "3236",
            "display": "EGFR"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName",
      "valueString": "Exon 21"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA6684-0",
            "display": "somatic"
          }
        ]
      }
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "55233-1",
        "display": "The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genetic analysis master panel-- This is the parent OBR for the panel holding all of the associated observations that can be reported with a molecular genetics analysis result."
      }
    ]
  },
  "subject": {
    "reference": "Patient/example",
    "display": "Molecular Lab Patient ID: HOSP-23456"
  },
  "effectiveDateTime": "2013-04-03T15:30:10+01:00",
  "performer": [
    {
      "reference": "Practitioner/example",
      "display": "Molecular Diagnostics Laboratory"
    }
  ],
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "10828004",
        "display": "Positive"
      }
    ]
  },
  "device": {
    "reference": "Device/example"
  }
}