STU3 Candidate

This page is part of the FHIR Specification (v1.8.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3

10.1.13.6.5 StructureDefinition: Observation-Genetics - Mappings

Mappings:

HL7 v2 Mapping

RIM Mapping

W5 Mapping

Mappings for the observation-genetics Profile.

10.1.13.7 Mappings for HL7 v2 Mapping (http://hl7.org/v2)

Observation-genetics
ObservationObservation-GeneticsOBX
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   extensionDNASequenceVariantType
   extensionAminoAcidChangeName
   extensionAminoAcidChangeType
   extensionGeneSymbol
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtension
   identifierOBX.21 For OBX segments from systems without OBX-21 support a combination of ORC/OBR and OBX must be negotiated between trading partners to uniquely identify the OBX segment. Depending on how V2 has been implemented each of these may be an option: 1) OBR-3 + OBX-3 + OBX-4 or 2) OBR-3 + OBR-4 + OBX-3 + OBX-4 or 2) some other way to uniquely ID the OBR/ORC + OBX-3 + OBX-4.
   statusOBX-11
   category
   codeOBX-3
   subjectPID-3
   encounterPV1
   effective[x]OBX-14, and/or OBX-19 after v2.4 (depends on who observation made)
   issuedOBR.22 (or MSH.7), or perhaps OBX-19 (depends on who observation made)
   performerOBX.15 / (Practitioner) OBX-16, PRT-5:PRT-4='RO' / (Device) OBX-18 , PRT-10:PRT-4='EQUIP' / (Organization) OBX-23, PRT-8:PRT-4='PO'
   value[x]OBX.2, OBX.5, OBX.6
   dataAbsentReasonN/A
   interpretationOBX-8
   commentNTE.3 (partner NTE to OBX, or sometimes another (child?) OBX)
   bodySiteOBX-20
   methodOBX-17
   specimenSPM segment
   deviceOBX-17 / PRT -10
   referenceRangeOBX.7
      id
      extension
      modifierExtension
      lowOBX-7
      highOBX-7
      meaningOBX-10?
      age
      textOBX-7
   relatedRelationships established by OBX-4 usage
      id
      extension
      modifierExtension
      typeN/A
      target
   componentcontainment by OBX-4?
      id
      extension
      modifierExtension
      codeOBX-3
      value[x]OBX.2, OBX.5, OBX.6
      dataAbsentReasonN/A
      interpretationOBX-8
      referenceRangeOBX.7

10.1.13.8 Mappings for RIM Mapping (http://hl7.org/v3)

Observation-genetics
ObservationObservation-GeneticsEntity. Role, or Act
   id
   meta
   implicitRules
   language
   textAct.text?
   containedN/A
   extension
   extensionDNASequenceVariantType
   extensionAminoAcidChangeName
   extensionAminoAcidChangeType
   extensionGeneSymbol
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtensionN/A
   identifierid
   statusstatus Amended & Final are differentiated by whether it is the subject of a ControlAct event with a type of "revise"
   category.outboundRelationship[typeCode="COMP].target[classCode="LIST", moodCode="EVN"].code
   codecode
   subjectparticipation[typeCode=SBJ]
   encounterinboundRelationship[typeCode=COMP].source[classCode=ENC, moodCode=EVN]
   effective[x]effectiveTime
   issuedparticipation[typeCode=AUT].time
   performerparticipation[typeCode=PRF]
   value[x]value
   dataAbsentReasonvalue.nullFlavor
   interpretationinterpretationCode
   commentsubjectOf.observationEvent[code="annotation"].value
   bodySitetargetSiteCode
   methodmethodCode
   specimenparticipation[typeCode=SPC].specimen
   deviceparticipation[typeCode=DEV]
   referenceRangeoutboundRelationship[typeCode=REFV]/target[classCode=OBS, moodCode=EVN]
      idn/a
      extensionn/a
      modifierExtensionN/A
      lowvalue:IVL_PQ.low
      highvalue:IVL_PQ.high
      meaninginterpretationCode
      ageoutboundRelationship[typeCode=PRCN].targetObservationCriterion[code="age"].value
      textvalue:ST
   relatedoutBoundRelationship
      idn/a
      extensionn/a
      modifierExtensionN/A
      type.typeCode
      target.targetObservation
   componentoutBoundRelationship[typeCode=COMP]
      idn/a
      extensionn/a
      modifierExtensionN/A
      codecode
      value[x]value
      dataAbsentReasonvalue.nullFlavor
      interpretationinterpretationCode
      referenceRangeoutboundRelationship[typeCode=REFV]/target[classCode=OBS, moodCode=EVN]

10.1.13.9 Mappings for W5 Mapping (http://hl7.org/fhir/w5)

Observation-genetics
ObservationObservation-Geneticsclinical.diagnostics
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   extensionDNASequenceVariantType
   extensionAminoAcidChangeName
   extensionAminoAcidChangeType
   extensionGeneSymbol
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtension
   identifierid
   statusstatus
   categoryclass
   codewhat
   subjectwho.focus
   encountercontext
   effective[x]when.done
   issuedwhen.recorded
   performerwho.actor
   value[x]
   dataAbsentReason
   interpretation
   comment
   bodySite
   method
   specimen
   device
   referenceRange
      id
      extension
      modifierExtension
      low
      high
      meaning
      age
      text
   related
      id
      extension
      modifierExtension
      type
      target
   component
      id
      extension
      modifierExtension
      codewhat
      value[x]
      dataAbsentReason
      interpretation
      referenceRange