STU 3 Ballot

This page is part of the FHIR Specification (v1.6.0: STU 3 Ballot 4). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

10.1.13.6.5 StructureDefinition: ObservationForGenetics - Mappings

Mappings:

HL7 v2 Mapping

RIM Mapping

W5 Mapping

Mappings for the observationforgenetics Profile.

10.1.13.7 Mappings for HL7 v2 Mapping (http://hl7.org/v2)

Observation for Genetics
ObservationObservationForGeneticsOBX
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   extensionTranscriptReferenceSequenceId
   extensionProteinReferenceSequenceId
   extensionDNASequenceVariant
   extensionDNAVariantId
   extensionDNASequenceVariantType
   extensionAminoAcidChange
   extensionAminoAcidChangeType
   extensionGene
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtension
   identifierOBX.21 For OBX segments from systems without OBX-21 support a combination of ORC/OBR and OBX must be negotiated between trading partners to uniquely identify the OBX segment. Depending on how V2 has been implemented each of these may be an option: 1) OBR-3 + OBX-3 + OBX-4 or 2) OBR-3 + OBR-4 + OBX-3 + OBX-4 or 2) some other way to uniquely ID the OBR/ORC + OBX-3 + OBX-4.
   statusOBX-11
   category
   codeOBX-3
   subjectPID-3
   encounterPV1
   effective[x]OBX-14, and/or OBX-19 after v2.4 (depends on who observation made)
   issuedOBR.22 (or MSH.7), or perhaps OBX-19 (depends on who observation made)
   performerOBX.15 / (Practitioner) OBX-16, PRT-5:PRT-4='RO' / (Device) OBX-18 , PRT-10:PRT-4='EQUIP' / (Organization) OBX-23, PRT-8:PRT-4='PO'
   value[x]OBX.2, OBX.5, OBX.6
   dataAbsentReasonN/A
   interpretationOBX-8
   commentNTE.3 (partner NTE to OBX, or sometimes another (child?) OBX)
   bodySiteOBX-20
   methodOBX-17
   specimenSPM segment
   deviceOBX-17 / PRT -10
   referenceRangeOBX.7
      id
      extension
      modifierExtension
      lowOBX-7
      highOBX-7
      meaningOBX-10?
      age
      textOBX-7
   relatedRelationships established by OBX-4 usage
      id
      extension
      modifierExtension
      typeN/A
      target
   componentcontainment by OBX-4?
      id
      extension
      modifierExtension
      codeOBX-3
      value[x]OBX.2, OBX.5, OBX.6
      dataAbsentReasonN/A
      interpretationOBX-8
      referenceRangeOBX.7

10.1.13.8 Mappings for RIM Mapping (http://hl7.org/v3)

Observation for Genetics
ObservationObservationForGeneticsEntity. Role, or Act
   id
   meta
   implicitRules
   language
   textAct.text?
   containedN/A
   extension
   extensionTranscriptReferenceSequenceId
   extensionProteinReferenceSequenceId
   extensionDNASequenceVariant
   extensionDNAVariantId
   extensionDNASequenceVariantType
   extensionAminoAcidChange
   extensionAminoAcidChangeType
   extensionGene
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtensionN/A
   identifierid
   statusstatus Amended & Final are differentiated by whether it is the subject of a ControlAct event with a type of "revise"
   category.outboundRelationship[typeCode="COMP].target[classCode="LIST", moodCode="EVN"].code
   codecode
   subjectparticipation[typeCode=SBJ]
   encounterinboundRelationship[typeCode=COMP].source[classCode=ENC, moodCode=EVN]
   effective[x]effectiveTime
   issuedparticipation[typeCode=AUT].time
   performerparticipation[typeCode=PRF]
   value[x]value
   dataAbsentReasonvalue.nullFlavor
   interpretationinterpretationCode
   commentsubjectOf.observationEvent[code="annotation"].value
   bodySitetargetSiteCode
   methodmethodCode
   specimenparticipation[typeCode=SPC].specimen
   deviceparticipation[typeCode=DEV]
   referenceRangeoutboundRelationship[typeCode=REFV]/target[classCode=OBS, moodCode=EVN]
      idn/a
      extensionn/a
      modifierExtensionN/A
      lowvalue:IVL_PQ.low
      highvalue:IVL_PQ.high
      meaninginterpretationCode
      ageoutboundRelationship[typeCode=PRCN].targetObservationCriterion[code="age"].value
      textvalue:ST
   relatedoutBoundRelationship
      idn/a
      extensionn/a
      modifierExtensionN/A
      type.typeCode
      target.targetObservation
   componentoutBoundRelationship[typeCode=COMP]
      idn/a
      extensionn/a
      modifierExtensionN/A
      codecode
      value[x]value
      dataAbsentReasonvalue.nullFlavor
      interpretationinterpretationCode
      referenceRangeoutboundRelationship[typeCode=REFV]/target[classCode=OBS, moodCode=EVN]

10.1.13.9 Mappings for W5 Mapping (http://hl7.org/fhir/w5)

Observation for Genetics
ObservationObservationForGeneticsclinical.diagnostics
   id
   meta
   implicitRules
   language
   text
   contained
   extension
   extensionTranscriptReferenceSequenceId
   extensionProteinReferenceSequenceId
   extensionDNASequenceVariant
   extensionDNAVariantId
   extensionDNASequenceVariantType
   extensionAminoAcidChange
   extensionAminoAcidChangeType
   extensionGene
   extensionDNARegionName
   extensionAlleleName
   extensionAllelicState
   extensionAllelicFrequency
   extensionCopyNumberEvent
   extensionGenomicSourceClass
   extensionPhaseSet
   extensionSequence
   extensionInterpretation
   modifierExtension
   identifierid
   statusstatus
   categoryclass
   codewhat
   subjectwho.focus
   encountercontext
   effective[x]when.done
   issuedwhen.recorded
   performerwho.actor
   value[x]
   dataAbsentReason
   interpretation
   comment
   bodySite
   method
   specimen
   device
   referenceRange
      id
      extension
      modifierExtension
      low
      high
      meaning
      age
      text
   related
      id
      extension
      modifierExtension
      type
      target
   component
      id
      extension
      modifierExtension
      codewhat
      value[x]
      dataAbsentReason
      interpretation
      referenceRange