STU 3 Ballot

This page is part of the FHIR Specification (v1.6.0: STU 3 Ballot 4). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3 R2

Diagnosticreport-micro1.json

Raw JSON (canonical form)

An example of a complex Micro Isolate and Sensitivities

{
  "resourceType": "DiagnosticReport",
  "id": "micro",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: micro</p><p><b>contained</b>: , , , , , , , , , , , , , , , , , , , , , , , , , </p><p><b>identifier</b>: 290741144</p><p><b>status</b>: final</p><p><b>category</b>: Microbiology <span>(Details : {http://hl7.org/fhir/v2/0074 code 'MB' = 'Microbiology)</span></p><p><b>code</b>: Culture, MRSA <span>(Details : {LOINC code '632-0' = 'Bacteria identified in Wound by Aerobe culture)</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>effective</b>: 07/08/2009 7:00:00 PM</p><p><b>issued</b>: 10/08/2009 8:25:44 AM</p><p><b>performer</b>: Todd Ashby</p><p><b>request</b>: id: req; 255337816; Original Order <span>(Details : {http://hl7.org/fhir/request-stage code 'original-order' = 'Original Order)</span>; Culture, MRSA <span>(Details : {LOINC code '632-0' = 'Bacteria identified in Wound by Aerobe culture)</span>; ????</p><p><b>result</b>: id: org1; status: final; Staphylococcus aureus Panel <span>(Details : {http://acme.org/lab/codes/organisms code 'Staaur' = '??)</span>; ????</p></div>"
  },
  "contained": [
    {
      "resourceType": "Observation",
      "id": "obx1-4",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "ORGANISM"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/organisms",
            "code": "Staaur"
          }
        ],
        "text": "Staphylococcus aureus"
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx1-5",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "CULTPOSNEG"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/flags",
            "code": "POS"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-1",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60504",
            "display": "Ampicillin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "R"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-2",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60512",
            "display": "Cefazolin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 2,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-4",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60516",
            "display": "Cefoxitin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 4,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-6",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60527",
            "display": "Clindamycin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": ">="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-8",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "61203",
            "display": "Daptomycin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 1,
        "comparator": ">="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-10",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60532",
            "display": "Doxycycline"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-12",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60533",
            "display": "Erythromycin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 8,
        "comparator": ">="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "R"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-14",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60536",
            "display": "Gentamicin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 2,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-16",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "61007",
            "display": "Levofloxacin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-18",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60699",
            "display": "Linezolid"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 4
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-20",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "61204",
            "display": "Moxifloxacin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-22",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60551",
            "display": "Oxacillin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-24",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60552",
            "display": "Penicillin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 2,
        "comparator": ">="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "R"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-26",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60697",
            "display": "Quinupristin/Dalfopristin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-28",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60555",
            "display": "Rifampin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-30",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60558",
            "display": "Tetracycline"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.5,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-32",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60561",
            "display": "Trimethoprim/Sulfamethoxazole"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 0.0526,
        "comparator": "<="
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obx2-34",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60563",
            "display": "Vancomycin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueQuantity": {
        "value": 1
      },
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "nte-1",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "2099930",
            "display": "D-Test"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "valueString": "D-Test:  Negative - This isolate does not demonstrate inducible clindamycin resistance in vitro."
    },
    {
      "resourceType": "Observation",
      "id": "obx3-1",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/tests",
            "code": "60036",
            "display": "Oxacillin"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "interpretation": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/v2/0078",
            "code": "S"
          }
        ]
      }
    },
    {
      "resourceType": "Observation",
      "id": "obr-2",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/panels",
            "code": "60790",
            "display": "Susceptibility - Automated broth dilution (Billed)"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "performer": [
        {
          "display": "Todd Ashby"
        }
      ],
      "related": [
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-1"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-2"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-4"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-6"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-8"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-10"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-12"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-14"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-16"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-18"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-20"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-22"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-24"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-26"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-28"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-30"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-32"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx2-34"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#nte-1"
          }
        }
      ]
    },
    {
      "resourceType": "Observation",
      "id": "obr-3",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/panels",
            "code": "60418",
            "display": "Susceptibility - Disk diffusion (Billed)"
          }
        ]
      },
      "subject": {
        "reference": "Patient/example"
      },
      "related": [
        {
          "type": "has-member",
          "target": {
            "reference": "#obx3-1"
          }
        }
      ]
    },
    {
      "resourceType": "Observation",
      "id": "org1",
      "status": "final",
      "code": {
        "coding": [
          {
            "system": "http://acme.org/lab/codes/organisms",
            "code": "Staaur"
          }
        ],
        "text": "Staphylococcus aureus Panel"
      },
      "subject": {
        "reference": "Patient/example"
      },
      "related": [
        {
          "type": "has-member",
          "target": {
            "reference": "#obx1-4"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obx1-5"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obr-2"
          }
        },
        {
          "type": "has-member",
          "target": {
            "reference": "#obr-3"
          }
        }
      ]
    },
    {
      "resourceType": "DiagnosticRequest",
      "id": "req",
      "identifier": [
        {
          "value": "255337816"
        }
      ],
      "stage": {
        "coding": [
          {
            "system": "http://hl7.org/fhir/request-stage",
            "code": "original-order"
          }
        ]
      },
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "632-0"
          }
        ],
        "text": "Culture, MRSA"
      },
      "subject": {
        "reference": "Patient/example"
      }
    }
  ],
  "identifier": [
    {
      "system": "http://hnam.org/identifiers/orders",
      "value": "290741144"
    }
  ],
  "status": "final",
  "category": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/v2/0074",
        "code": "MB"
      }
    ]
  },
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "632-0"
      }
    ],
    "text": "Culture, MRSA"
  },
  "subject": {
    "reference": "Patient/example"
  },
  "effectiveDateTime": "2009-08-07T19:00:00+10:00",
  "issued": "2009-08-10T08:25:44+10:00",
  "performer": [
    {
      "display": "Todd Ashby"
    }
  ],
  "request": [
    {
      "reference": "#req"
    }
  ],
  "result": [
    {
      "reference": "#org1"
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.