Connectathon 11 Snapshot

This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

??.??.6 Resource nehta-colorectal - Detailed Descriptions

Detailed Descriptions for the elements in the nehta-colorectal resource.

Colorectal
Definition

Colorectal cancer.

Control1..1
Colorectal.subject
Definition

The subject of the report. Usually, but not always, this is a patient. However diagnostic services also perform analyses on specimens collected from a variety of other sources.

Control1..1
TypeReference(Patient | Group)
Alternate NamesPatient
Summarytrue
SNOMED-CT Code116154003
Colorectal.requester
Definition

The practitioner that holds legal responsibility for ordering the investigation.

Control0..1
TypeReference(Practitioner)
Summarytrue
LOINC Code22027-7
SNOMED-CT Code223366009
To DoNeed to made cardinality [1..1] as the build initially gets errors with this setting.
Colorectal.performer
Definition

The diagnostic service that is responsible for issuing the report.

Control0..1
TypeReference(Practitioner | Organization)
Requirements

Need to know whom to contact if there are queries about the results. Also may need to track the source of reports for secondary data analysis.

Alternate NamesLaboratory; Service; Practitioner; Department; Company
Summarytrue
Comments

This is not necessarily the source of the atomic data items - it is the entity that takes responsibility for the clinical report.

SNOMED-CT Code420158005
To DoNeed to made cardinality [1..1] as the build initially gets errors with this setting.
Colorectal.preAnalytic
Definition

Pre Analytic component - information collection prior to specimen receipt at laboratory.

Control0..1
Comments

This is just a group/section header and is not a result field.

InvariantsDefined on this element
inv-01: If there is a perforation, the perforation type must be indicated. (expression: , xpath: not(f:perforation/@value = 'present') or exists(f:natureOfPerforation))
LOINC Code70949-3
Colorectal.preAnalytic.clinicalInformation
Definition

Clinical information provided on request form.

Control0..1
Typestring
LOINC Code55752-0
Colorectal.preAnalytic.operatingSurgeonDetails
Definition

The operating surgeon name and contact details.

Control0..1
TypeReference(Practitioner)
Summarytrue
LOINC Code22027-7
To DoNeed to made cardinality [1..1] as the build initially gets errors with this setting. Query if relevant for operating surgeon.
Colorectal.preAnalytic.perforation
Definition

Presence or absence of a perforation.

Control0..1
BindingPresentAbsentNotstated: A code that indicates whether perforation is present (Required)
Typecode
Requirements

If present, record the nature of perforation.

InvariantsAffect this element
inv-01: If there is a perforation, the perforation type must be indicated. (expression: , xpath: not(f:perforation/@value = 'present') or exists(f:natureOfPerforation))
SNOMED-CT Code36191001
Colorectal.preAnalytic.natureOfPerforation
Definition

The type of perforation.

Control0..*
BindingNehtaNatureOfPerforation: A code that indicates the type of perforation (Required)
Typecode
To DoQuery if need to: add invariant =1 & add the xpath expression to the invariant tab.
Colorectal.preAnalytic.clinicalObstruction
Definition

Whether a clinical obstruction is present or absent.

Control0..1
BindingPresentAbsentNotstated: A code that indicates whether a clinical obstruction is present (Required)
Typecode
Colorectal.preAnalytic.tumourLocation
Definition

Anatomical location of the tumour from a given list.

Control0..*
BindingColorectalCancerTumourLocation: A code that indicates the antomical location of the tumour from a given list (Required)
Typecode
InvariantsDefined on this element
inv-02: If the tumour location is rectum, then the distance from the anal verge must be recorded. (expression: , xpath: not(@value = 'Rectum') or exists(f:distanceAnalVerge))
Affect this element
LOINC Code33725-3
SNOMED-CT Code371480007
To Do? - add UNK to codeset.
Colorectal.preAnalytic.synchronousTumours
Definition

For synchronous tumours indicate each other site.

Control0..1
Typestring
Requirements

Conditional on rectum being selected. Measured in cm for RCPA requirements.

Comments

Note : Synchronous tumours should be reported separately – this serves only to identify the presence of other synchronous tumours for which separate reports will be submitted.

To Do? If there needs to be an invariant due to this being conditional on Rectum being selected as site.
Colorectal.preAnalytic.distanceAnalVerge
Definition

Quantitative measurement of distance from anal verge.

Control0..1
TypeSimpleQuantity
Requirements

Conditional on rectum being selected. Measured in cm for RCPA requirements.

Comments

Conditional on rectum being selected Note : Measured in cm by longstanding surgical convention.

LOINC Code33748-5
SNOMED-CT Code371490004
Colorectal.preAnalytic.typeOfOperation
Definition

The type of operation selected from a list.

Control0..1
BindingColorectalCancerOperationType: A code that indicates the type of operation (Required)
Typecode
Requirements

Single selection value list. If other procedure(s) is selected, record type of procedure. If anterior resection is selected, record anterior resection type.

InvariantsDefined on this element
inv-03: If other procedure(s) is selected, then record the type of procedure. (expression: , xpath: not(@value = 'Other procedure(s)') or exists(f:typeOfProcedure))
inv-04: If anterior resection is selected, record anterior resection type. (expression: , xpath: not(@value = 'Anterior resection') or exists(f:anteriorResectionType))
Affect this element
LOINC Code29306-8
To Do? - add UNK to codeset.
Colorectal.preAnalytic.typeOfProcedure
Definition

Type of procedure.

Control0..1
Typestring
Colorectal.preAnalytic.anteriorResectionType
Definition

The type of anterior resection.

Control0..1
BindingHiLowUltralow: A code that idicates the type of anterior resection (Required)
Typecode
Requirements

Single selection value list.

To DoCheck with RCPA about Definition ? - add UNK to codeset.
Colorectal.preAnalytic.preoperativeRadiotherapy
Definition

An indication of pre-operative radiotherapy.

Control0..1
BindingYesNoNotStated: A code that indicates whether pre-operative radiotherapy was used (Required)
Typecode
Requirements

Single selection value list. If yes, record type of course.

InvariantsDefined on this element
inv-05: If pre-operative radiotherapy is done, then the type of course is to be recorded. (expression: , xpath: not(@value = 'Yes') or exists(f:typeOfCourse))
Affect this element
To Do? add an invariant to accommodate the conditional statement "if Yes …".
Colorectal.preAnalytic.typeOfCourse
Definition

The type of course of pre-operative radiotherapy.

Control0..1
BindingTypeOfCourse: A code that indicates the type of course of pre-operative radiotherapy (Required)
Typecode
Colorectal.preAnalytic.surgeonsOpinion
Definition

Surgeons opinion on the existence of local residual cancer postsurgery.

Control0..1
Typestring
To DoFYI - short label & definition did not like apostrophe s ie surgeon's.
Colorectal.preAnalytic.adjacentOrgans
Definition

Involvement of adjacent organs.

Control0..1
Typestring
Colorectal.preAnalytic.newPrimaryOrRecurrence
Definition

An indication of whether a new primary cancer or a recurrence.

Control0..1
BindingNehtaCancerPrimaryOrRecurrence: A code that indicates whether a new primary cancer or an recurrence (Required)
Typecode
Requirements

Single selection value list. If regional (local) recurrence or distant metastasis describe.

Comments

? If need to make an invariant due to the conditional statement.

InvariantsDefined on this element
inv-06: If regional (local) recurrence or distant metastasis describe. (expression: , xpath: not((@value = 'Regional (local) recurrence') or (@value = 'Distant metastases')) or exists(f:describe))
Affect this element
Colorectal.preAnalytic.RecurrenceDescription
Definition

Description of regional (local) recurrence or distant metastases.

Control0..1
Typestring
Colorectal.preAnalytic.pathologyAccessionNumber
Definition

Pathology accession number.

Control0..1
Typestring
Colorectal.preAnalytic.otherRelevantDetails
Definition

Other relevant details.

Control0..1
Typestring
Colorectal.macro
Definition

Macroscopic findings.

Control0..1
Comments

This is just a group/section header and is not a result field.

InvariantsDefined on this element
inv-09: If lymph nodes are received, record the number of nodes (expression: , xpath: not(f:lymphNodes/@value = 'Received') or exists(f:noLymphNodesPerCassette))
inv-15: If lymph nodes have been received the tumour inolvement in the lymph nodes is to be recorded. (expression: , xpath: not(lymphNodes/@value = 'Received') or exists(f:.lymphNodeInvolvement))
LOINC Code70949-3
SNOMED-CT Code250429001
Colorectal.macro.specimenLength
Definition

The length of the specimen.

Control1..1
TypeSimpleQuantity
Requirements

measurement in mm.

Comments

Query if measurements are in mm is international ie USA and query if this comment needs to be refined to AUS? Ditto for subsequent metric measurements.

LOINC Code33723-8
SNOMED-CT Code384606002
Colorectal.macro.tumourSite
Definition

The site of the tumour.

Control1..1
BindingColorectalCancerTumourLocation: A code that indicates the site of the tumour (Required)
Typecode
InvariantsDefined on this element
inv-07: If tumour site is rectum, the relationship to anterior peritoneal reflection is to be recorded. (expression: , xpath: not(@value = 'Rectum') or exists(f:relToAntPeritonealReflection))
inv-08: If tumour site is rectum, the intactness of mesorectum is to be recorded. (expression: , xpath: not(@value = 'Rectum') or exists(f:intactnessOfMesorectum))
inv-13: If the tumour is a rectal tumour the status of the nonperitonealised circumferential margin (rectal tumours) is to be recorded. (expression: , xpath: not(f:Colorectal.preAnalytic.tumourLocation/@value = 'Rectum') or exists(f:Colorectal.micro.nonperitonealisedCircumMargin))
Affect this element
LOINC Code33725-3
SNOMED-CT Code371480007
Colorectal.macro.maxTumourDiameter
Definition

Maximum tumour diameter.

Control1..1
TypeSimpleQuantity
Requirements

measurement in mm.

LOINC Code21889-1
Colorectal.macro.distanceNearerProxOrDistal
Definition

Distance of tumour to the nearer proximal or distal "cut end".

Control1..*
TypeSimpleQuantity
Requirements

measurement in mm.

Colorectal.macro.distNonperitonCircumMargin
Definition

Distance of tumour to the nonperitonealised circumferential margin.

Control1..1
TypeSimpleQuantity
Requirements

measurement in mm.

Colorectal.macro.tumourPerforation
Definition

The presence or absence of tumour perforation.

Control1..1
BindingPresentAbsent: A code that indicates the presence or absence of a tumour perforation (Required)
Typecode
Requirements

Single selection value list.

Colorectal.macro.relToAntPeritonealReflection
Definition

Site of tumour in relation to the anterior level of the peritoneal reflection.

Control0..1
BindingNehtaRelAnteriorPeritonealReflection: A code that indicates the site of tumour in relation to the anterior level of the peritoneal reflection (Required)
Typecode
Requirements

Single selection value list. Conditional on rectum being selected in Tumour Site.

To Do? Make an invariant on rectum in tumour site.
Colorectal.macro.intactnessOfMesorectum
Definition

For rectal resections the intactness of the mesorectum must be recorded.

Control0..1
BindingMesorectumIntactness: A code that indicates the intactness of the mesorectum (Required)
Typecode
Requirements

Single selection value list. Conditional on rectum being selected in Tumour Site.

LOINC Code33730-3
SNOMED-CT Code408655002
To Do? Make an invariant on rectum in tumour site.
Colorectal.macro.peritoneum
Definition

Any involvement of the peritoneum should be recorded.

Control0..1
BindingNehtaPeritoneumInvasion: A code that indicates the tumour invovlement in the peritoneum (Required)
Typecode
Requirements

Single selection value list.

Colorectal.macro.lymphNodes
Definition

If lymph nodes are received, then they should be recorded.

Control0..1
BindingReceivedNotreceived: A code that indicates if lymph nodes were received (Required)
Typecode
Requirements

Conditional: If received, record the number of nodes.

InvariantsAffect this element
inv-09: If lymph nodes are received, record the number of nodes (expression: , xpath: not(f:lymphNodes/@value = 'Received') or exists(f:noLymphNodesPerCassette))
inv-15: If lymph nodes have been received the tumour inolvement in the lymph nodes is to be recorded. (expression: , xpath: not(lymphNodes/@value = 'Received') or exists(f:.lymphNodeInvolvement))
LOINC Code?? 44621-1
SNOMED-CT Code364108009
Colorectal.macro.noLymphNodesPerCassette
Definition

The number of lymph nodes placed in each cassette should be recorded.

Control0..*
Typestring
Comments

The RCPA require the following be recorded: "Numeric: in cassette: " Query how to record this?

Colorectal.macro.polyps
Definition

The presence or absence of polyps should be recorded.

Control0..1
BindingPresentAbsent: A code that indicates the presence or absence of polyp(s) (Required)
Typecode
Requirements

Conditional: If present, provide a polyp summary.

InvariantsDefined on this element
inv-10: If polyps are present, provide a polyp summary. (expression: , xpath: not(f@value = 'Present') or exists(f:polypSummary))
Affect this element
LOINC Code?? 33745-1
Colorectal.macro.polypSummary
Definition

The polyp summary should include the numbers, diameter range and gross appearance.

Control0..1
Typestring
Colorectal.macro.otherMacroComments
Definition

A descriptive or narrative field should be provided to record any macroscopic information that is not recorded in the above standards and guidelines, and that would normally form part of the macroscopic description.

Control0..1
Typestring
SNOMED-CT Code395526000
Colorectal.macro.natureAndSiteOfBlocks
Definition

The nature and sites of all blocks must be recorded.

Control1..*
Typestring
Colorectal.micro
Definition

Microscopy of the sample.

Control0..1
Comments

This is just a group/section header and is not a result field.

LOINC Code70949-3
Colorectal.micro.tumourType
Definition

A single selection value list from WHO Classification of Tumours.

Control1..1
BindingTumourType: A code from the WHO Calssification that indicates the tumour type (Required)
Typecode
Requirements

Single selection value list from WHO Classification of Tumours. Pathology and Genetics of Tumours of the Digestive System (2010).

Comments

How to represent this result group which has heading and components cf the bindings file is a flat file??

SNOMED-CT Code371441004
Colorectal.micro.histologicalGrade
Definition

The histological grading of the tumour must be recorded.

Control1..1
BindingHistologicalGrade: A code that indicates the histological grade of the tumour (Required)
Typecode
Requirements

Single selection value list.

SNOMED-CT Code371469007
Colorectal.micro.maxDegreeLocalInvasion
Definition

The maximum degree of local invasion into or through the bowel wall must be recorded.

Control1..1
BindingDegreeInvasionBowelWall: A code that indicates the maximum degree of local invasion into or through the bowel wall (Required)
Typecode
Requirements

Single selection value list.

LOINC Code33759-2
Colorectal.micro.proximalOrDistalResectionMargins
Definition

Involvement of the proximal or distal resection margins (cut-end margins) by tumour must be recorded. If the margin is less than 10 mm, the clearance must be recorded.

Control0..1
BindingCRCInvolvedNotinvolved: A code that indicates involvement of the proximal or distal resection (cut-end) margins (Required)
Typecode
Requirements

Single selection value list. If involved is selected, record involved margin(s) If not involved is selected, record microscopic clearance.

InvariantsDefined on this element
inv-11: If the tumour is involved in the proximal or distal resection (‘cut-end’) margins, then record invovled margin(s). (expression: , xpath: not(f@value = 'Involved') or exists(f:involvedMargins))
inv-12: If the tumour is not involved in the proximal or distal resection (‘cut-end’) margins, then record the microscopic clearance. (expression: , xpath: not(@value = 'Not involved') or exists(f:microClearance))
Affect this element
Colorectal.micro.involvedMargins
Definition

Involvement of the proximal or distal resection margins (cut-end margins) by tumour must be recorded. If the margin is less than 10 mm, the clearance must be recorded.

Control1..*
BindingDistalProximal: A code that indicates the involvement at the margins (Required)
Typecode
Requirements

Multi select value list (select all that apply). This is a conditional field.

SNOMED-CT Code423105004
Colorectal.micro.marginsMicroClearance
Definition

If the margin is less than 10 mm, the clearance must be recorded.

Control0..1
TypeSimpleQuantity
Requirements

Numeric: ___mm (if the margin is less than 10 mm) OR Clearance is ≥10mm.

Comments

Query how to achieve this??

Colorectal.micro.nonperitonealisedCircumMargin
Definition

The status of the nonperitonealised circumferential margin in rectal tumours must be recorded.

Control0..1
BindingInvolvedNotinvolved: A code that indicates the status of the nonperitonealised circumferential margin in rectal tumours (Required)
Typecode
Requirements

Single selection value list. Conditional on rectum being selected in S2.02 If not involved is selected, record microscopic clearance.

InvariantsDefined on this element
inv-14: If the tumour is a rectal tumour and the status of the nonperitonealised circumferential margin (rectal tumours) is not involved, then the clearance is to be recorded. (expression: , xpath: not(@value = 'Not involved') or exists(f:microClearanceRectum))
Affect this element
Colorectal.micro.microClearanceRectum
Definition

In rectal tumours, the minimum distance in millimetres between the tumour and the nonperitonealised (circumferential, radial) margin must be recorded from the histological slides.

Control0..1
TypeSimpleQuantity
Requirements

Is conditional.

Colorectal.micro.lymphNodeInvolvement
Definition

Results of lymph node histopathology must be recorded.

Control0..1
BindingPresentAbsent: A code that indicates lymph node involvement (Required)
Typecode
Requirements

Single selection value list. Conditional on nodes being received in G2.02. If G2.02 has been recorded as “not received” this standard is not required. If present, record site(s) and number of lymph nodes.

InvariantsDefined on this element
inv-16: If tumour positive lymph nodes are present then record the site(s) and numbers of lymph nodes. (expression: , xpath: not(@value = 'Present') or exists(f:lymphNodesDetails))
Affect this element
LOINC Code?? 21892-5
Colorectal.micro.lymphNodesDetails
Definition

If lymph node(s) received then the site(s) and numbers of lymph nodes must be recorded.

Control0..*
Typestring
Requirements

Text: Site of lymph node AND Numeric: /_ (Number of positive nodes/ Total number of nodes from this site) Site is the LN drainage relevant to the site of tumour being reported.

Comments

Query if this field needs to be broken in to a number of fields??

Colorectal.micro.extramuralTumourDeposits
Definition

The presence or absence of isolated extra-mural tumour deposits is to be recorded.

Control0..1
BindingPresentAbsent: A code that indicates the presence or absence of isolated extra-mural tumour deposits. (Required)
Typecode
Requirements

Single selection value list.

Colorectal.micro.apicalNodeInvolvement
Definition

Involvement of the apical lymph node should be recorded.

Control0..1
BindingPresentAbsent: A code that indicates apical node involvement (Required)
Typecode
Requirements

Single selection value list.

Colorectal.micro.venousSmallVesselInvasion
Definition

For all tumours, venous and small vessel invasion must be reported and its anatomic location specified as intramural or extramural.

Control0..1
Typestring
Comments

This is just a header and is not a data field ?? How to be entered in the resource.

SNOMED-CT Code371512006
Colorectal.micro.intramuralVeinInvasion
Definition

Intramural invasion must be reported on.

Control1..1
BindingNotIdentifiedPresent: A code that indicates intramural vein invasion (Required)
Typecode
Requirements

Single selection value list.

Colorectal.micro.extramuralVeinInvasion
Definition

Extramural invasion must be reported on.

Control1..1
BindingNotIdentifiedPresent: A code that indicates extramural vein invasion (Required)
Typecode
Requirements

Single selection value list.

Colorectal.micro.smallVesselInvasion
Definition

Small vessel invasion must be reported on.

Control1..1
BindingNotIdentifiedPresentPresentExtensive: A code that indicates small vessel invasion (Required)
Typecode
Requirements

Single selection value list.

SNOMED-CT Code372264001
Colorectal.micro.perineuralInvasion
Definition

Perineural invasion must be reported on.

Control1..1
BindingNotIdentifiedPresentPresentExtensive: A code that indicates perineural invasion (Required)
Typecode
Requirements

Single selection value list.

LOINC Code33741-0
SNOMED-CT Code371513001
Colorectal.micro.histoConfDistMetastases
Definition

The presence or absence of histologically confirmed distant metastases must be recorded.

Control1..1
BindingPresentAbsent: A code that indicates the presence or absence of histologically confirmed distant metastases (Required)
Typecode
Requirements

Single selection value list. If present, record sites.

InvariantsDefined on this element
inv-17: If histologically confirmed distant metastases are present then the sites are to be recorded. (expression: , xpath: not(@value = 'Present') or exists(f:site))
Affect this element
SNOMED-CT Code399608002
Colorectal.micro.histoConfDistMetastasesSite
Definition

The site of histologically confirmed distant metastases must be recorded.

Control0..1
Typestring
Requirements

Is conditional.

LOINC Code21920-4
SNOMED-CT Code385421009
Colorectal.micro.relCoexistPathabnorm
Definition

The relevant coexistent pathological abnormalities must be recorded.

Control1..*
BindingCoexistentPathologicalAbnormalities: A code that indicates the relevant coexistent pathological abnormalities (Required)
Typecode
Requirements

Multi select value list (select all that apply). ?? How is this indicated?? If Polyps is selected provide details If Ulcerative colitis or Crohn’s disease is selected record dysplasia If other is selected, provide details in “other abnormality”.

InvariantsDefined on this element
inv-18: If polyps are present as relevant coexistent pathological abnormalities, then polyp details are to be recorded. (expression: , xpath: not(@value = 'Polyps') or exists(f:polypDetails))
inv-19: If Ulcerative colitis is present as relevant coexistent pathological abnormality, then dysplasia is to be recorded. (expression: , xpath: not(@value = 'Ulcerative colitis') or exists(f:dysplasia))
inv-20: If Crohn's disease is present as relevant coexistent pathological abnormality, then dysplasia is to be recorded. (expression: , xpath: not(@value = 'Crohns disease') or exists(f:dysplasia))
inv-21: If other abnormalities is selected as relevant coexistent pathological abnormality, then other abnormaily details are to be recorded. (expression: , xpath: not(@value = 'Other') or exists(f:otherAbnormality))
Affect this element
SNOMED-CT Code371498006
Colorectal.micro.polypDetails
Definition

The polyp details (type, number, polyposis syndrome criteria met etc) is to be recorded.

Control0..1
Typestring
Requirements

Is conditional.

Colorectal.micro.dysplasia
Definition

If Ulcerative colitis or Crohns disease is selected for relevant coexistent pathological abnormalities record dysplasia.

Control0..1
BindingDysplasia: A code that indicates dysplasia if Ulcerative colitis or Crohn's disease is selected for relevant coexistent pathological abnormalities (Required)
Typecode
Requirements

Single selection value list. Is conditional.

Comments

Cannot have an apostrophe in a spreadsheet eg Crohn apostrophe s.

Colorectal.micro.otherAbnormality
Definition

Record any other abnormality.

Control0..1
Typestring
LOINC Code44624-5
Colorectal.micro.microResidualTumourStatus
Definition

The microscopic residual tumour status (completeness of resection) is to be recorded.

Control1..1
Typestring
Colorectal.micro.neoadjuvantTherapy
Definition

The response to neoadjuvant therapy should be recorded.

Control0..1
BindingResponseToNeoadjuvantTherapy: A code that indicates the response to neoadjuvant therapy (Required)
Typecode
Colorectal.micro.microComments
Definition

Other Microscopic comments should be recorded.

Control0..1
Typestring
SNOMED-CT Code395527009
Colorectal.ancillaryTests
Definition

Ancillary test findings are to be recorded.

Control0..1
Requirements

Immunohistochemical stains for microsatellite instability will be performed and a supplementary report issued.

Comments

This is just a group/section header and is not a result field, but some example reports this field was used as a comment field.

LOINC Code70949-3
Colorectal.ancillaryTests.mismatchRepairEnz
Definition

Mismatch repair enzymes are to be recorded.

Control1..1
Comments

This is just a sub-group/sub-section header and is not a result field.

Colorectal.ancillaryTests.mlh1
Definition

MLH-1 testing.

Control0..1
BindingStainType: A code that indicates MLH-1 testing (Required)
Typecode
Requirements

Single selection value list.

LOINC Code50322-7
Colorectal.ancillaryTests.pms2
Definition

PMS-2 testing.

Control0..1
BindingStainType: A code that indicates PMS-2 testing (Required)
Typecode
Requirements

Single selection value list.

LOINC Code50328-4
Colorectal.ancillaryTests.msh2
Definition

MSH-2 testing.

Control0..1
BindingStainType: A code that indicates MSH-2 testing (Required)
Typecode
Requirements

Single selection value list.

LOINC Code50323-5
Colorectal.ancillaryTests.msh6
Definition

MSH-6 testing.

Control0..1
BindingStainType: A code that indicates MSH-6 testing (Required)
Typecode
Requirements

Single selection value list.

LOINC Code50324-3
Colorectal.ancillaryTests.comments
Definition

Mismatch repair enzyme comments can be recorded.

Control0..1
Typestring
LOINC Code8262-8
Colorectal.ancillaryTests.msi
Definition

Microsatellite instability (MSI) to be recorded.

Control0..1
Requirements

Single selection value list. If unstable or stable, record laboratory performing test and report number.

Comments

This is just a group/section header and is not a result field.

InvariantsAffect this element
inv-22: If MSI unstable, record laboratory performing test and report number (expression: , xpath: not(@value = 'Unstable') or exists(f:LabDetails))
inv-23: If MSI stable, record laboratory performing test and report number (expression: , xpath: not(@value = 'Stable') or exists(f:LabDetails))
Colorectal.ancillaryTests.msi.code
Definition

Microsatellite instability (MSI) to be recorded.

Control0..1
BindingUnstableStable: A code that indicates Microsatellite instability (MSI) (Required)
Typecode
InvariantsDefined on this element
inv-22: If MSI unstable, record laboratory performing test and report number (expression: , xpath: not(@value = 'Unstable') or exists(f:LabDetails))
inv-23: If MSI stable, record laboratory performing test and report number (expression: , xpath: not(@value = 'Stable') or exists(f:LabDetails))
LOINC Codeemail to Meagan
SNOMED-CT Code443412009
Colorectal.ancillaryTests.msi.comments
Definition

Microsatellite instability (MSI) comments can be recorded.

Control0..1
Typestring
Requirements

Conditional.

Colorectal.ancillaryTests.msi.labDetails
Definition

Microsatellite instability (MSI) laboratory performing test and report number can be recorded.

Control0..1
Typestring
Requirements

Conditional.

Colorectal.ancillaryTests.braf
Definition

BRAF (V600E mutation) testing.

Control0..1
Requirements

Single selection value list. If mutated or wild type, record laboratory performing test and report number.

Comments

This is just a group/section header and is not a result field.

InvariantsAffect this element
inv-24: If BRAF mutated, record laboratory performing test and report number (expression: , xpath: not(@value = 'Mutated') or exists(f:LabDetails))
inv-25: If BRAF wild type, record laboratory performing test and report number (expression: , xpath: not(@value = 'Wild type') or exists(f:LabDetails))
Colorectal.ancillaryTests.braf.code
Definition

BRAF (V600E mutation) testing.

Control0..1
BindingMutatedWildtype: A code that indicates the BRAF (V600E mutation) (Required)
Typecode
InvariantsDefined on this element
inv-24: If BRAF mutated, record laboratory performing test and report number (expression: , xpath: not(@value = 'Mutated') or exists(f:LabDetails))
inv-25: If BRAF wild type, record laboratory performing test and report number (expression: , xpath: not(@value = 'Wild type') or exists(f:LabDetails))
LOINC Code58483-9
Colorectal.ancillaryTests.braf.comments
Definition

BRAF (V600E mutation) comments can be recorded.

Control0..1
Typestring
LOINC Code8264-4
Colorectal.ancillaryTests.braf.labDetails
Definition

BRAF (V600E mutation) laboratory performing test and report number can be recorded.

Control0..1
Typestring
Colorectal.ancillaryTests.kras
Definition

KRAS gene mutation (codons 12 and 13) testing.

Control0..1
Comments

This is just a group/section header and is not a result field.

InvariantsAffect this element
inv-26: If KRAS mutated, record laboratory performing test and report number (expression: , xpath: not(@value = 'Mutated') or exists(f:LabDetails))
inv-27: If KRAS wild type, record laboratory performing test and report number (expression: , xpath: not(@value = 'Wild type') or exists(f:LabDetails))
Colorectal.ancillaryTests.kras.code
Definition

KRAS gene mutation (codons 12 and 13) testing.

Control0..1
BindingMutatedWildtype: A code that indicates the KRAS gene mutation (codons 12 and 13) (Required)
Typecode
InvariantsDefined on this element
inv-26: If KRAS mutated, record laboratory performing test and report number (expression: , xpath: not(@value = 'Mutated') or exists(f:LabDetails))
inv-27: If KRAS wild type, record laboratory performing test and report number (expression: , xpath: not(@value = 'Wild type') or exists(f:LabDetails))
LOINC Code21703-4
Colorectal.ancillaryTests.kras.comments
Definition

KRAS gene mutation (codons 12 and 13) comments can be recorded.

Control0..1
Typestring
LOINC Code8266-9
Colorectal.ancillaryTests.kras.labDetails
Definition

KRAS gene mutation (codons 12 and 13) laboratory performing test and report number can be recorded.

Control0..1
Typestring
Colorectal.synthesisOverview
Definition

Synthesis and Overview are to be recorded.

Control0..1
Comments

This is just a group/section header and is not a result field.

LOINC Code70949-3
Colorectal.synthesisOverview.tumourStage
Definition

Tumour stage is to be recorded.

Control1..1
Typestring
Comments

This is just a sub-group/sub-section header and is not a result field.

SNOMED-CT Code371508000
Colorectal.synthesisOverview.tumourStageT
Definition

Tumour stage T is to be recorded.

Control0..1
BindingCrcTumourStageT: A code that records tumour stage T (Required)
Typecode
Requirements

Single selection value list.

LOINC Code21899-0
SNOMED-CT Code78873005
Colorectal.synthesisOverview.tumourStageN
Definition

Tumour stage N is to be recorded.

Control0..1
BindingCrcTumourStageN: A code that records tumour stage N (Required)
Typecode
Requirements

Single selection value list.

LOINC Code21900-6
Colorectal.synthesisOverview.tumourStageM
Definition

Tumour stage M is to be recorded.

Control0..1
BindingCrcTumourStageM: A code that records tumour stage M (Required)
Typecode
Requirements

Single selection value list.

LOINC Code67211-3
Colorectal.synthesisOverview.tumourStageGrouping
Definition

Tumour stage grouping is to be recorded.

Control1..1
BindingTumourStageGrouping: A code that records tumour stage grouping (Required)
Typecode
Requirements

Single selection value list.

Comments

Check the formatting of the result group.

Colorectal.synthesisOverview.tumourStagingSystem
Definition

Year and/or edition of staging system is to be recorded.

Control1..1
Typestring
Requirements

Numeric: year AND/OR Text: Edition eg 1st, 2nd etc.

LOINC Code? 67203-0
SNOMED-CT Code443941007
Colorectal.synthesisOverview.residualTumourStatus
Definition

The residual tumour status must be recorded according to the AJCC Cancer Staging Manual (7th Edition).

Control1..1
BindingResidualTumourStatus: An R code that records the residual tumour status (Required)
Typestring
SNOMED-CT Code17964000
Colorectal.synthesisOverview.diagnosticSummary
Definition

Diagnostic summary is to be recorded.

Control0..1
Typestring
Requirements

Include: a. specimen type b. tumour site c. tumour type d. tumour stage e. completeness of excision.

Summarytrue
LOINC Code34574-4
Colorectal.synthesisOverview.newPrimaryOrRecurrence
Definition

New primary cancer or recurrence is to be recorded.

Control0..1
BindingNewCancerOrRecurrence: A code that records whether a new primary cancer or a recurrence (Required)
Typecode
Requirements

Single selection value list. If regional (local) recurrence or distant metastasis describe.

Colorectal.synthesisOverview.newDescription
Definition

Description of regional (local) recurrence or distant metastases.

Control0..1
Typestring
Requirements

Conditional.

Colorectal.synthesisOverview.overarchingComment
Definition

Synthesis and overview overarching comment.

Control0..1
Typestring
Requirements

Conditional.

LOINC Code22638-1