Extension: PredictedAminoAcidChange

Connectathon 11 Snapshot

This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension PredictedAminoAcidChange - Detailed Descriptions

Detailed Descriptions for the elements in the extension.

Extension
Definition	HGVS nomenclature for predicted amino acid change.
Control	0..*
Type	Extension
Extension.id
Definition	unique id for the element within a resource (for internal references).
Control	0..1
Type	id
Extension.extension
Definition	An Extension
Control	0..*
Type	Extension
Slicing	This element introduces a set of slices. The slicing rules are: unordered Open discriminators: url
Extension.extension(HGVS)
Definition	Protein variant following HGVS nomenclature on the given ProteinReferenceSequenceId.
Control	0..1
Type	Extension
Extension.extension.id
Definition	unique id for the element within a resource (for internal references).
Control	0..1
Type	id
Extension.extension.extension(extension)
Definition	An Extension
Control	0..0
Type	Extension
Extension.extension.url
Definition	Source of the definition for the extension code - a logical name or a URL.
Control	1..1
Type	uri
Comments	The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.
Fixed Value	HGVS
Extension.extension.valueCodeableConcept
Definition	Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).
Control	1..1
Type	CodeableConcept
Extension.extension(referenceSeq)
Definition	Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL.
Control	0..1
Type	Extension
Extension.extension.id
Definition	unique id for the element within a resource (for internal references).
Control	0..1
Type	id
Extension.extension.extension(extension)
Definition	An Extension
Control	0..0
Type	Extension
Extension.extension.url
Definition	Source of the definition for the extension code - a logical name or a URL.
Control	1..1
Type	uri
Comments	The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.
Fixed Value	referenceSeq
Extension.extension.valueCodeableConcept
Definition	Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).
Control	1..1
Type	CodeableConcept
Extension.extension(predictionModel)
Definition	Prediction model used for amino acid change.
Control	0..1
Type	Extension
Extension.extension.id
Definition	unique id for the element within a resource (for internal references).
Control	0..1
Type	id
Extension.extension.extension(extension)
Definition	An Extension
Control	0..0
Type	Extension
Extension.extension.url
Definition	Source of the definition for the extension code - a logical name or a URL.
Control	1..1
Type	uri
Comments	The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.
Fixed Value	predictionModel
Extension.extension.valueCodeableConcept
Definition	Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).
Control	1..1
Type	CodeableConcept
Extension.url
Definition	Source of the definition for the extension code - a logical name or a URL.
Control	1..1
Type	uri
Comments	The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.
Fixed Value	http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidVariation
Extension.value[x]
Definition	Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).
Control	0..0
Type	Choice of: boolean, integer, decimal, base64Binary, instant, string, uri, date, dateTime, time, code, oid, id, unsignedInt, positiveInt, markdown, Annotation, Attachment, Identifier, CodeableConcept, Coding, Quantity, Range, Period, Ratio, SampledData, Signature, HumanName, Address, ContactPoint, Timing, Reference, Meta
[x] Note	See Choice of Data Types for further information about how to use [x]