Connectathon 11 Snapshot
This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions 
PredictedAminoAcidChange
{
"resourceType": "StructureDefinition",
"id": "observation-geneticsAminoAcidVariation",
"url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidVariation",
"name": "PredictedAminoAcidChange",
"status": "draft",
"publisher": "Health Level Seven International (Clinical Genomics)",
"contact": [
{
"telecom": [
{
"system": "other",
"value": "http://www.hl7.org/Special/committees/clingenomics"
}
]
}
],
"date": "2015-03-18",
"description": "HGVS nomenclature for predicted amino acid change.",
"fhirVersion": "1.2.0",
"kind": "datatype",
"constrainedType": "Extension",
"abstract": false,
"contextType": "resource",
"context": [
"Observation"
],
"base": "http://hl7.org/fhir/StructureDefinition/Extension",
"snapshot": {
"element": [
{
"path": "Extension",
"short": "PredictedAminoAcidChange",
"definition": "HGVS nomenclature for predicted amino acid change.",
"min": 0,
"max": "*",
"base": {
"path": "Extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "id"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"path": "Extension.extension",
"slicing": {
"discriminator": [
"url"
],
"ordered": false,
"rules": "open"
},
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "*",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension",
"name": "HGVS",
"short": "HGVSAminoAcidVariation",
"definition": "Protein variant following HGVS nomenclature on the given ProteinReferenceSequenceId.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "id"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "0",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comments": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "HGVS",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.extension.valueCodeableConcept",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 1,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.extension",
"name": "referenceSeq",
"short": "ProteinReference SequenceId",
"definition": "Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "id"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "0",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comments": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "referenceSeq",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.extension.valueCodeableConcept",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 1,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.extension",
"name": "predictionModel",
"short": "PredictionModel",
"definition": "Prediction model used for amino acid change.",
"min": 0,
"max": "1",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.id",
"representation": [
"xmlAttr"
],
"short": "xml:id (or equivalent in JSON)",
"definition": "unique id for the element within a resource (for internal references).",
"min": 0,
"max": "1",
"base": {
"path": "Extension.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "id"
}
],
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"short": "Extension",
"definition": "An Extension",
"min": 0,
"max": "0",
"base": {
"path": "Extension.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comments": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "predictionModel",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.extension.valueCodeableConcept",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 1,
"max": "1",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "CodeableConcept"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.url",
"representation": [
"xmlAttr"
],
"short": "identifies the meaning of the extension",
"definition": "Source of the definition for the extension code - a logical name or a URL.",
"comments": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.",
"min": 1,
"max": "1",
"base": {
"path": "Extension.url",
"min": 1,
"max": "1"
},
"type": [
{
"code": "uri"
}
],
"fixedUri": "http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidVariation",
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"path": "Extension.value[x]",
"short": "Value of extension",
"definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).",
"min": 0,
"max": "0",
"base": {
"path": "Extension.value[x]",
"min": 0,
"max": "1"
},
"type": [
{
"code": "boolean"
},
{
"code": "integer"
},
{
"code": "decimal"
},
{
"code": "base64Binary"
},
{
"code": "instant"
},
{
"code": "string"
},
{
"code": "uri"
},
{
"code": "date"
},
{
"code": "dateTime"
},
{
"code": "time"
},
{
"code": "code"
},
{
"code": "oid"
},
{
"code": "id"
},
{
"code": "unsignedInt"
},
{
"code": "positiveInt"
},
{
"code": "markdown"
},
{
"code": "Annotation"
},
{
"code": "Attachment"
},
{
"code": "Identifier"
},
{
"code": "CodeableConcept"
},
{
"code": "Coding"
},
{
"code": "Quantity"
},
{
"code": "Range"
},
{
"code": "Period"
},
{
"code": "Ratio"
},
{
"code": "SampledData"
},
{
"code": "Signature"
},
{
"code": "HumanName"
},
{
"code": "Address"
},
{
"code": "ContactPoint"
},
{
"code": "Timing"
},
{
"code": "Reference"
},
{
"code": "Meta"
}
],
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
}
]
},
"differential": {
"element": [
{
"path": "Extension",
"short": "PredictedAminoAcidChange",
"definition": "HGVS nomenclature for predicted amino acid change.",
"min": 0,
"max": "*",
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension",
"name": "HGVS",
"short": "HGVSAminoAcidVariation",
"definition": "Protein variant following HGVS nomenclature on the given ProteinReferenceSequenceId.",
"min": 0,
"max": "1",
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"max": "0"
},
{
"path": "Extension.extension.url",
"type": [
{
"code": "uri"
}
],
"fixedUri": "HGVS"
},
{
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"path": "Extension.extension",
"name": "referenceSeq",
"short": "ProteinReference SequenceId",
"definition": "Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL.",
"min": 0,
"max": "1",
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"max": "0"
},
{
"path": "Extension.extension.url",
"type": [
{
"code": "uri"
}
],
"fixedUri": "referenceSeq"
},
{
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"path": "Extension.extension",
"name": "predictionModel",
"short": "PredictionModel",
"definition": "Prediction model used for amino acid change.",
"min": 0,
"max": "1",
"type": [
{
"code": "Extension"
}
]
},
{
"path": "Extension.extension.extension",
"name": "extension",
"max": "0"
},
{
"path": "Extension.extension.url",
"type": [
{
"code": "uri"
}
],
"fixedUri": "predictionModel"
},
{
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"path": "Extension.url",
"type": [
{
"code": "uri"
}
],
"fixedUri": "http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidVariation"
},
{
"path": "Extension.value[x]",
"min": 0,
"max": "0"
}
]
}
}
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
© HL7.org 2011+. FHIR DSTU2 (v1.2.0-7447) generated on Fri, Dec 11, 2015 17:41+1100.
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