2nd DSTU Draft For Comment

This page is part of the FHIR Specification (v0.4.0: DSTU 2 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension Type of variation expressed using Sequence Ontology or LOINC codes. - Definition

URL for this extension: 

http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType

Status: draft

Codified type for associated DNA Sequence Variation. DNA Sequence Variations use the HGVS notation which implies the DNA Sequence Variation Type, but the concurrent use of this code will allow a standard and explicit type for technical and display convenience. LOINC Answer List values 48019-4 or Sequence Ontology vaues.

Mollie Ullman-Cullere

usage info: todo

Extension Content

Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extensionExtensionURL = http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType
Type of variation expressed using Sequence Ontology or LOINC codes.: Codified type for associated DNA Sequence Variation. DNA Sequence Variations use the HGVS notation which implies the DNA Sequence Variation Type, but the concurrent use of this code will allow a standard and explicit type for technical and display convenience. LOINC Answer List values 48019-4 or Sequence Ontology vaues.
Use on element: Observation
..valueString 0..1stringType of variation expressed using Sequence Ontology or LOINC codes.
Use on element: Observation

XML Template

<!-- Type of variation expressed using Sequence Ontology or LOINC codes. -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType" >
 <!-- from Element: extension -->
 <valueString value="[string]"/>
</extension>

JSON Template

// extension added to existing objectdoco

  "http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType" : { // Type of variation expressed using Sequence Ontology or LOINC codes.
    "valueString" : ["<string>"] //Type of variation expressed using Sequence Ontology or LOINC codes.
  }

Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extensionExtensionURL = http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType
Type of variation expressed using Sequence Ontology or LOINC codes.: Codified type for associated DNA Sequence Variation. DNA Sequence Variations use the HGVS notation which implies the DNA Sequence Variation Type, but the concurrent use of this code will allow a standard and explicit type for technical and display convenience. LOINC Answer List values 48019-4 or Sequence Ontology vaues.
Use on element: Observation
..valueString 0..1stringType of variation expressed using Sequence Ontology or LOINC codes.
Use on element: Observation

XML Template

<!-- Type of variation expressed using Sequence Ontology or LOINC codes. -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/ProfilegeneticsDNASequenceVariationType" >
 <!-- from Element: extension -->
 <valueString value="[string]"/>
</extension>

JSON Template

to do