FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5
0.0.1-snapshot-2 - informative
FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5
0.0.1-snapshot-2 - informative
FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5 - Version 0.0.1-snapshot-2. See the Directory of published versions
| Page standards status: Informative | Maturity Level: 1 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="genomicstudy-dataformat"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<p>This code system
<code>http://hl7.org/fhir/genomicstudy-dataformat</code> defines the following codes:
</p>
<table class="codes">
<tr>
<td style="white-space:nowrap">
<b>Code</b>
</td>
<td>
<b>Display</b>
</td>
</tr>
<tr>
<td style="white-space:nowrap">bam
<a name="genomicstudy-dataformat-bam"> </a>
</td>
<td>BAM</td>
</tr>
<tr>
<td style="white-space:nowrap">bed
<a name="genomicstudy-dataformat-bed"> </a>
</td>
<td>BED</td>
</tr>
<tr>
<td style="white-space:nowrap">bedpe
<a name="genomicstudy-dataformat-bedpe"> </a>
</td>
<td>BEDPE</td>
</tr>
<tr>
<td style="white-space:nowrap">bedgraph
<a name="genomicstudy-dataformat-bedgraph"> </a>
</td>
<td>BedGraph</td>
</tr>
<tr>
<td style="white-space:nowrap">bigbed
<a name="genomicstudy-dataformat-bigbed"> </a>
</td>
<td>bigBed</td>
</tr>
<tr>
<td style="white-space:nowrap">bigWig
<a name="genomicstudy-dataformat-bigWig"> </a>
</td>
<td>bigWig</td>
</tr>
<tr>
<td style="white-space:nowrap">birdsuite-files
<a name="genomicstudy-dataformat-birdsuite-files"> </a>
</td>
<td>Birdsuite-Files</td>
</tr>
<tr>
<td style="white-space:nowrap">broadpeak
<a name="genomicstudy-dataformat-broadpeak"> </a>
</td>
<td>broadPeak</td>
</tr>
<tr>
<td style="white-space:nowrap">cbs
<a name="genomicstudy-dataformat-cbs"> </a>
</td>
<td>CBS</td>
</tr>
<tr>
<td style="white-space:nowrap">chemical-reactivity-probing-profiles
<a name="genomicstudy-dataformat-chemical-reactivity-probing-profiles"> </a>
</td>
<td>Chemical-Reactivity-Probing-Profiles</td>
</tr>
<tr>
<td style="white-space:nowrap">chrom-sizes
<a name="genomicstudy-dataformat-chrom-sizes"> </a>
</td>
<td>chrom-sizes</td>
</tr>
<tr>
<td style="white-space:nowrap">cn
<a name="genomicstudy-dataformat-cn"> </a>
</td>
<td>CN</td>
</tr>
<tr>
<td style="white-space:nowrap">custom-file-formats
<a name="genomicstudy-dataformat-custom-file-formats"> </a>
</td>
<td>Custom-File-Formats</td>
</tr>
<tr>
<td style="white-space:nowrap">cytoband
<a name="genomicstudy-dataformat-cytoband"> </a>
</td>
<td>Cytoband</td>
</tr>
<tr>
<td style="white-space:nowrap">fasta
<a name="genomicstudy-dataformat-fasta"> </a>
</td>
<td>FASTA</td>
</tr>
<tr>
<td style="white-space:nowrap">gct
<a name="genomicstudy-dataformat-gct"> </a>
</td>
<td>GCT</td>
</tr>
<tr>
<td style="white-space:nowrap">cram
<a name="genomicstudy-dataformat-cram"> </a>
</td>
<td>CRAM</td>
</tr>
<tr>
<td style="white-space:nowrap">genepred
<a name="genomicstudy-dataformat-genepred"> </a>
</td>
<td>genePred</td>
</tr>
<tr>
<td style="white-space:nowrap">gff-gtf
<a name="genomicstudy-dataformat-gff-gtf"> </a>
</td>
<td>GFF/GTF</td>
</tr>
<tr>
<td style="white-space:nowrap">gistic
<a name="genomicstudy-dataformat-gistic"> </a>
</td>
<td>GISTIC</td>
</tr>
<tr>
<td style="white-space:nowrap">goby
<a name="genomicstudy-dataformat-goby"> </a>
</td>
<td>Goby</td>
</tr>
<tr>
<td style="white-space:nowrap">gwas
<a name="genomicstudy-dataformat-gwas"> </a>
</td>
<td>GWAS</td>
</tr>
<tr>
<td style="white-space:nowrap">igv
<a name="genomicstudy-dataformat-igv"> </a>
</td>
<td>IGV</td>
</tr>
<tr>
<td style="white-space:nowrap">loh
<a name="genomicstudy-dataformat-loh"> </a>
</td>
<td>LOH</td>
</tr>
<tr>
<td style="white-space:nowrap">maf-multiple-alignment-format
<a name="genomicstudy-dataformat-maf-multiple-alignment-format"> </a>
</td>
<td>MAF-Multiple Alignment Format</td>
</tr>
<tr>
<td style="white-space:nowrap">maf-mutation-annotation-format
<a name="genomicstudy-dataformat-maf-mutation-annotation-format"> </a>
</td>
<td>MAF-Mutation-Annotation-Format</td>
</tr>
<tr>
<td style="white-space:nowrap">merged-bam-file
<a name="genomicstudy-dataformat-merged-bam-file"> </a>
</td>
<td>Merged BAM File</td>
</tr>
<tr>
<td style="white-space:nowrap">mut
<a name="genomicstudy-dataformat-mut"> </a>
</td>
<td>MUT</td>
</tr>
<tr>
<td style="white-space:nowrap">narrowpeak
<a name="genomicstudy-dataformat-narrowpeak"> </a>
</td>
<td>narrowPeak</td>
</tr>
<tr>
<td style="white-space:nowrap">psl
<a name="genomicstudy-dataformat-psl"> </a>
</td>
<td>PSL</td>
</tr>
<tr>
<td style="white-space:nowrap">res
<a name="genomicstudy-dataformat-res"> </a>
</td>
<td>RES</td>
</tr>
<tr>
<td style="white-space:nowrap">rna-secondary-structure-formats
<a name="genomicstudy-dataformat-rna-secondary-structure-formats"> </a>
</td>
<td>RNA-Secondary-Structure-Formats</td>
</tr>
<tr>
<td style="white-space:nowrap">sam
<a name="genomicstudy-dataformat-sam"> </a>
</td>
<td>SAM</td>
</tr>
<tr>
<td style="white-space:nowrap">sample-info-attributes-file
<a name="genomicstudy-dataformat-sample-info-attributes-file"> </a>
</td>
<td>Sample-Info-Attributes-file</td>
</tr>
<tr>
<td style="white-space:nowrap">seg
<a name="genomicstudy-dataformat-seg"> </a>
</td>
<td>SEG</td>
</tr>
<tr>
<td style="white-space:nowrap">tdf
<a name="genomicstudy-dataformat-tdf"> </a>
</td>
<td>TDF</td>
</tr>
<tr>
<td style="white-space:nowrap">track-line
<a name="genomicstudy-dataformat-track-line"> </a>
</td>
<td>Track Line</td>
</tr>
<tr>
<td style="white-space:nowrap">type-line
<a name="genomicstudy-dataformat-type-line"> </a>
</td>
<td>Type Line</td>
</tr>
<tr>
<td style="white-space:nowrap">vcf
<a name="genomicstudy-dataformat-vcf"> </a>
</td>
<td>VCF</td>
</tr>
<tr>
<td style="white-space:nowrap">wig
<a name="genomicstudy-dataformat-wig"> </a>
</td>
<td>WIG</td>
</tr>
</table>
</div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="informative"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="1"/>
</extension>
<extension url="http://hl7.org/fhir/StructureDefinition/package-source">
<extension url="packageId">
<valueId value="hl7.fhir.uv.xver-r5.r4"/>
</extension>
<extension url="version">
<valueString value="0.0.1-snapshot-2"/>
</extension>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="cg"/>
</extension>
<url value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<name value="GenomicStudyDataFormat"/>
<title value="Genomic Study Data Format"/>
<status value="active"/>
<experimental value="true"/>
<date value="2022-08-18T05:49:24+10:00"/>
<publisher value="Clinical Genomics"/>
<contact>
<name value="Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
</telecom>
</contact>
<description
value="The data format relevant to genomics. These formats and relevant codes were pulled from [Integrative Genomics Viewer Documentation](https://software.broadinstitute.org/software/igv/FileFormats) by Broad Institute."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<caseSensitive value="true"/>
<valueSet value="http://hl7.org/fhir/ValueSet/genomicstudy-dataformat"/>
<content value="complete"/>
<concept>
<code value="bam"/>
<display value="BAM"/>
</concept>
<concept>
<code value="bed"/>
<display value="BED"/>
</concept>
<concept>
<code value="bedpe"/>
<display value="BEDPE"/>
</concept>
<concept>
<code value="bedgraph"/>
<display value="BedGraph"/>
</concept>
<concept>
<code value="bigbed"/>
<display value="bigBed"/>
</concept>
<concept>
<code value="bigWig"/>
<display value="bigWig"/>
</concept>
<concept>
<code value="birdsuite-files"/>
<display value="Birdsuite-Files"/>
</concept>
<concept>
<code value="broadpeak"/>
<display value="broadPeak"/>
</concept>
<concept>
<code value="cbs"/>
<display value="CBS"/>
</concept>
<concept>
<code value="chemical-reactivity-probing-profiles"/>
<display value="Chemical-Reactivity-Probing-Profiles"/>
</concept>
<concept>
<code value="chrom-sizes"/>
<display value="chrom-sizes"/>
</concept>
<concept>
<code value="cn"/>
<display value="CN"/>
</concept>
<concept>
<code value="custom-file-formats"/>
<display value="Custom-File-Formats"/>
</concept>
<concept>
<code value="cytoband"/>
<display value="Cytoband"/>
</concept>
<concept>
<code value="fasta"/>
<display value="FASTA"/>
</concept>
<concept>
<code value="gct"/>
<display value="GCT"/>
</concept>
<concept>
<code value="cram"/>
<display value="CRAM"/>
</concept>
<concept>
<code value="genepred"/>
<display value="genePred"/>
</concept>
<concept>
<code value="gff-gtf"/>
<display value="GFF/GTF"/>
</concept>
<concept>
<code value="gistic"/>
<display value="GISTIC"/>
</concept>
<concept>
<code value="goby"/>
<display value="Goby"/>
</concept>
<concept>
<code value="gwas"/>
<display value="GWAS"/>
</concept>
<concept>
<code value="igv"/>
<display value="IGV"/>
</concept>
<concept>
<code value="loh"/>
<display value="LOH"/>
</concept>
<concept>
<code value="maf-multiple-alignment-format"/>
<display value="MAF-Multiple Alignment Format"/>
</concept>
<concept>
<code value="maf-mutation-annotation-format"/>
<display value="MAF-Mutation-Annotation-Format"/>
</concept>
<concept>
<code value="merged-bam-file"/>
<display value="Merged BAM File"/>
</concept>
<concept>
<code value="mut"/>
<display value="MUT"/>
</concept>
<concept>
<code value="narrowpeak"/>
<display value="narrowPeak"/>
</concept>
<concept>
<code value="psl"/>
<display value="PSL"/>
</concept>
<concept>
<code value="res"/>
<display value="RES"/>
</concept>
<concept>
<code value="rna-secondary-structure-formats"/>
<display value="RNA-Secondary-Structure-Formats"/>
</concept>
<concept>
<code value="sam"/>
<display value="SAM"/>
</concept>
<concept>
<code value="sample-info-attributes-file"/>
<display value="Sample-Info-Attributes-file"/>
</concept>
<concept>
<code value="seg"/>
<display value="SEG"/>
</concept>
<concept>
<code value="tdf"/>
<display value="TDF"/>
</concept>
<concept>
<code value="track-line"/>
<display value="Track Line"/>
</concept>
<concept>
<code value="type-line"/>
<display value="Type Line"/>
</concept>
<concept>
<code value="vcf"/>
<display value="VCF"/>
</concept>
<concept>
<code value="wig"/>
<display value="WIG"/>
</concept>
</CodeSystem>
IG © 2025+ FHIR Infrastructure. Package hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2 based on FHIR 4.0.1. Generated 2025-09-13
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