Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

CodeSystem: Variant Confidence Status Codes (Experimental)

Official URL: http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs Version: 3.0.0
Active as of 2024-12-12 Computable Name: VariantConfidenceStatusCS

A code that represents the confidence of a true positive variant call.

This Code system is referenced in the content logical definition of the following value sets:

Generated Narrative: CodeSystem variant-confidence-status-cs

This case-sensitive code system http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs defines the following codes:

CodeDisplayDefinition
high High High confidence true positive variant call. Suitable for clinical reporting.
intermediate Intermediate Candidate true positive variant call. Unable to confirm without additional testing.
low Low High confidence false positive variant call.