This page is part of the Genetic Reporting Implementation Guide (v0.1.0: STU 1 Ballot 1) based on FHIR v3.3.0. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

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Raw json

{
  "resourceType" : "CodeSystem",
  "id" : "genetic-coordinate-system",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns="http://www.w3.org/1999/xhtml"><h2>GeneticCoordinateSystem</h2><div><p>Base coordinate systems start and end measurements for variants</p>
</div><p>This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genetic-coordinate-system defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">0<a name="genetic-coordinate-system-0"> </a></td><td>0-based</td><td>0-based numbering or interbase coordinate system, inclusive start, exclusive end</td></tr><tr><td style="white-space:nowrap">1<a name="genetic-coordinate-system-1"> </a></td><td>1-based</td><td>1 for 1-based numbering or base coordinate system, inclusive start, inclusive end</td></tr></table></div>"
  },
  "url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genetic-coordinate-system",
  "version" : "2018may",
  "name" : "GeneticCoordinateSystem",
  "status" : "draft",
  "experimental" : false,
  "date" : "2018-04-04T06:23:39+10:00",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url"
        },
        {
          "system" : "email"
        }
      ]
    }
  ],
  "description" : "Base coordinate systems start and end measurements for variants",
  "caseSensitive" : true,
  "valueSet" : "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genetic-coordinate-system",
  "content" : "complete",
  "concept" : [
    {
      "code" : "0",
      "display" : "0-based",
      "definition" : "0-based numbering or interbase coordinate system, inclusive start, exclusive end"
    },
    {
      "code" : "1",
      "display" : "1-based",
      "definition" : "1 for 1-based numbering or base coordinate system, inclusive start, inclusive end"
    }
  ]
}