This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v2.1.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
Bundle mcode-patient-bundle-jenny-m of type collection
Entry 1 - fullUrl = http://example.org/fhir/Patient/cancer-patient-jenny-m
Resource Patient:
Jenny M Female, DoB: 1965-01-01 ( Medical Record Number: MRN1234 (use: USUAL))
Entry 2 - fullUrl = http://example.org/fhir/Condition/primary-cancer-condition-jenny-m
Resource Condition:
Generated Narrative: Condition
Resource Condition "primary-cancer-condition-jenny-m"
Profile: Primary Cancer Condition Profile
Texts
- Div * <div/> Histology-Morphology-Behavior Extension: Adenocarcinoma, no subtype, intermediate grade (morphologic abnormality) (SNOMED CT#413448000)
clinicalStatus: Remission (Condition Clinical Status Codes#remission)
verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)
category: Problem List Item (Condition Category Codes#problem-list-item)
code: Primary malignant neoplasm of female left breast (disorder) (SNOMED CT#353431000119107)
subject: See above (Patient/cancer-patient-jenny-m)
onset: 2018-03-16
Stages
- Summary Assessment * 3C (cancerstaging.org#3C) See above (Observation/tnm-clinical-stage-group-jenny-m)
Entry 3 - fullUrl = http://example.org/fhir/MedicationRequest/cancer-related-medication-request-cyclophosphamide-jenny-m
Resource MedicationRequest:
Generated Narrative: MedicationRequest
Resource MedicationRequest "cancer-related-medication-request-cyclophosphamide-jenny-m"
Texts
- Div * <div/> Procedure Intent Extension: Curative - procedure intent (qualifier value) (SNOMED CT#373808002)
status: ACTIVE
intent: ORDER
category: Outpatient (MedicationRequest Category Codes#outpatient)
subject: See above (Patient/cancer-patient-jenny-m)
authoredOn: 2018-04-12
requester: See above (Practitioner/us-core-practitioner-owen-oncologist)
dosageInstruction
Entry 4 - fullUrl = http://example.org/fhir/Observation/cancer-disease-status-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "cancer-disease-status-jenny-m"
Profile: Cancer Disease Status Profile
Texts
- Div * <div/> Cancer Disease Status Evidence Type Extension: Imaging (procedure) (SNOMED CT#363679005)
status: FINAL
code: Cancer Disease Progression (LOINC#97509-4)
subject: See above (Patient/cancer-patient-jenny-m)
focus: See above (Condition/primary-cancer-condition-jenny-m)
effective: 2018-11-01
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
value: Patient's condition improved (finding) (SNOMED CT#268910001)
Entry 5 - fullUrl = http://example.org/fhir/Observation/genomic-variant-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "genomic-variant-jenny-m"
Profile: Genomic Variant Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Genetic variant assessment (LOINC#69548-6)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-15
value: Present (LOINC#LA9633-4)
method: Sequencing (LOINC#LA26398-0)
component
code: Gene studied [ID] (LOINC#48018-6)
value: PALB2 (HUGO Gene Nomenclature Committee Genes#HGNC:26144)
component
code: Discrete genetic variant (LOINC#81252-9)
value: NM_024675.3(PALB2):c.3549C>A (p.Tyr1183Ter) (ClinVar Variant ID#128144)
component
code: Genomic DNA change (gHGVS) (LOINC#81290-9)
value: NC_000016.10:g.23603471G>T (Human Genome Variation Society nomenclature#NC_000016.10:g.23603471G>T)
component
code: Genomic source class [Type] (LOINC#48002-0)
value: Somatic (LOINC#LA6684-0)
Entry 6 - fullUrl = http://example.org/fhir/DiagnosticReport/genomics-report-jenny-m
Resource DiagnosticReport:
Master HL7 genetic variant reporting panel (Laboratory, Genetics)
Subject Jenny M female, DoB: 1965-01-01 ( Medical Record Number: MRN1234 (use: USUAL)) When For 2018-03-15 Reported 2020-03-15 00:00:01+0000 Report Details
Code Value When For Reported Genetic variant assessment Present 2018-03-15 DNA region of interest panel 2018-03-15 2018-03-15 00:00:01+0000
Entry 7 - fullUrl = http://example.org/fhir/Procedure/cancer-related-surgical-procedure-jenny-m
Resource Procedure:
Generated Narrative: Procedure
Resource Procedure "cancer-related-surgical-procedure-jenny-m"
Texts
- Div * <div/> Procedure Intent Extension: Curative - procedure intent (qualifier value) (SNOMED CT#373808002)
status: COMPLETED
category: Surgical procedure (procedure) (SNOMED CT#387713003)
code: Partial mastectomy (procedure) (SNOMED CT#64368001)
subject: See above (Patient/cancer-patient-jenny-m)
bodySite: Left breast structure (body structure) (SNOMED CT#80248007)
Entry 8 - fullUrl = http://example.org/fhir/Procedure/radiotherapy-treatment-summary-chest-wall-jenny-m
Resource Procedure:
Generated Narrative: Procedure
Resource Procedure "radiotherapy-treatment-summary-chest-wall-jenny-m"
Profile: Radiotherapy Course Summary Profile
Texts
- Div * <div/> Radiotherapy Number of Sessions Extension: 31
Procedure Intent Extension: Curative - procedure intent (SNOMED CT#373808002)
Radiotherapy Modality And Technique Extension
url
Radiotherapy Modality Extensionvalue: External beam radiation therapy using photons (procedure) (SNOMED CT#1156506007)
url
Radiotherapy Technique Extensionvalue: Volumetric Modulated Arc Therapy (procedure) (SNOMED CT#1156530009)
Radiotherapy Modality And Technique Extension
url
Radiotherapy Modality Extensionvalue: Teleradiotherapy using electrons (SNOMED CT#45643008)
url
Radiotherapy Technique Extensionvalue: Three dimensional external beam radiation therapy (procedure) (SNOMED CT#1162782007)
Radiotherapy Dose Delivered To Volume Extension
url
volume
value: BodyStructure/jenny-m-chest-wall-treatment-volume
url
totalDoseDelivered
value: 6000 cGy (Details: UCUM code cGy = 'cGy')
url
fractionsDelivered
value: 30
Radiotherapy Dose Delivered To Volume Extension
url
volume
value: BodyStructure/jenny-m-chest-wall-lymph-nodes-treatment-volume
url
totalDoseDelivered
value: 5000 cGy (Details: UCUM code cGy = 'cGy')
url
fractionsDelivered
value: 25
status: COMPLETED
category: Radiation oncology AND/OR radiotherapy (procedure) (SNOMED CT#108290001)
code: Radiotherapy course of treatment (SNOMED CT#1217123003)
subject: See above (Patient/cancer-patient-jenny-m)
bodySite: Chest Wall Structure (body structure) (SNOMED CT#78904004)
Entry 9 - fullUrl = http://example.org/fhir/Observation/tnm-clinical-stage-group-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tnm-clinical-stage-group-jenny-m"
Profile: Cancer Stage Group Profile
Texts
- Div * <div/> status: FINAL
code: Stage group.clinical Cancer (LOINC#21908-9)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
value: IIB (cancerstaging.org#2B)
method: American Joint Commission on Cancer, Cancer Staging Manual, 8th edition neoplasm staging system (tumor staging) (SNOMED CT#897275008)
hasMember:
Entry 10 - fullUrl = http://example.org/fhir/Observation/tnm-clinical-primary-tumor-category-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tnm-clinical-primary-tumor-category-jenny-m"
Profile: TNM Primary Tumor Category Profile
Texts
- Div * <div/> status: FINAL
code: Primary tumor.clinical [Class] Cancer (LOINC#21905-5)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
value: cT3 (cancerstaging.org#cT3)
method: American Joint Commission on Cancer, Cancer Staging Manual, 8th edition neoplasm staging system (tumor staging) (SNOMED CT#897275008)
Entry 11 - fullUrl = http://example.org/fhir/Observation/tnm-clinical-regional-nodes-category-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tnm-clinical-regional-nodes-category-jenny-m"
Profile: TNM Regional Nodes Category Profile
Texts
- Div * <div/> status: FINAL
code: Regional lymph nodes.clinical [Class] Cancer (LOINC#21906-3)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
value: cN0 (cancerstaging.org#cN0)
method: American Joint Commission on Cancer, Cancer Staging Manual, 8th edition neoplasm staging system (tumor staging) (SNOMED CT#897275008)
Entry 12 - fullUrl = http://example.org/fhir/Observation/tnm-clinical-distant-metastases-category-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tnm-clinical-distant-metastases-category-jenny-m"
Texts
- Div * <div/> status: FINAL
code: Distant metastases.clinical [Class] Cancer (LOINC#21907-1)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
value: cM0 (cancerstaging.org#cM0)
method: American Joint Commission on Cancer, Cancer Staging Manual, 8th edition neoplasm staging system (tumor staging) (SNOMED CT#897275008)
Entry 13 - fullUrl = http://example.org/fhir/Specimen/genomic-specimen-left-breast-jenny-m
Resource Specimen:
Resource Specimen "genomic-specimen-left-breast-jenny-m"
Profile: Genomic Specimen Profile
Texts
- Div * <div/> status: AVAILABLE
type: Tissue (specimenType#TISS)
subject: See above (Patient/cancer-patient-jenny-m)
Collections
- Collector BodySite * See above (Practitioner/us-core-practitioner-owen-oncologist) Left breast structure (body structure) (SNOMED CT#80248007) Processings
- Time[x] * 2018-03-06
Entry 14 - fullUrl = http://example.org/fhir/Observation/genomic-region-studied-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "genomic-region-studied-jenny-m"
Profile: Genomic Region Studied Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: DNA region of interest panel (LOINC#53041-0)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-15
issued: 15 Mar 2018, 11:00:01 am
Components
- Code Value[x] * Gene studied [ID] (LOINC#48018-6) BRCA1 (HUGO Gene Nomenclature Committee Genes#1100; HUGO Gene Nomenclature Committee Genes#1101 "BRCA2"; HUGO Gene Nomenclature Committee Genes#1748 "CDH1"; HUGO Gene Nomenclature Committee Genes#26144 "PALB2"; HUGO Gene Nomenclature Committee Genes#9588 "PTEN"; HUGO Gene Nomenclature Committee Genes#11389 "STK11"; HUGO Gene Nomenclature Committee Genes#11998 "TP53")
Entry 15 - fullUrl = http://example.org/fhir/Observation/ecog-performance-status-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "ecog-performance-status-jenny-m"
Profile: ECOG Performance Status Profile
Texts
- Div * <div/> status: FINAL
category: Survey (Observation Category Codes#survey)
code: ECOG Performance Status score (LOINC#89247-1)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-12
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
value: 0
interpretation: Fully active, able to carry on all pre-disease performance without restriction (LOINC#LA9622-7)
method: Physical examination procedure (procedure) (SNOMED CT#5880005)
Entry 16 - fullUrl = http://example.org/fhir/Observation/tumor-marker-test-er-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tumor-marker-test-er-jenny-m"
Profile: Tumor Marker Test Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain (LOINC#85337-4)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-10
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
value: Positive (LOINC#LA6576-8)
Entry 17 - fullUrl = http://example.org/fhir/Observation/tumor-marker-test-pr-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tumor-marker-test-pr-jenny-m"
Profile: Tumor Marker Test Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Progesterone receptor Ag [Presence] in Breast cancer specimen by Immune stain (LOINC#85339-0)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-10
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
value: Negative (LOINC#LA6577-6)
Entry 18 - fullUrl = http://example.org/fhir/Observation/tumor-marker-test-her2-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tumor-marker-test-her2-jenny-m"
Profile: Tumor Marker Test Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: HER2 [Interpretation] in Tissue (LOINC#48676-1)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-10
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
value: Negative (LOINC#LA6577-6)
Entry 19 - fullUrl = http://example.org/fhir/Observation/tumor-marker-test-oncotype-dx-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tumor-marker-test-oncotype-dx-jenny-m"
Profile: Tumor Marker Test Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Oncotype DX Breast Recurrence Score Assay (gtr#509910)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-12
performer: Organization/us-core-organization-bedrock-medicine "Bedrock Medicine"
value: 47 Recurrence score (Details: UCUM code {ScoreOf} = '{ScoreOf}')
interpretation: High (ObservationInterpretation#H)
Entry 20 - fullUrl = http://example.org/fhir/MedicationRequest/cancer-related-medication-request-doxorubicin-jenny-m
Resource MedicationRequest:
Generated Narrative: MedicationRequest
Resource MedicationRequest "cancer-related-medication-request-doxorubicin-jenny-m"
Texts
- Div * <div/> Procedure Intent Extension: Curative - procedure intent (qualifier value) (SNOMED CT#373808002)
status: ACTIVE
intent: ORDER
category: Outpatient (MedicationRequest Category Codes#outpatient)
subject: See above (Patient/cancer-patient-jenny-m)
authoredOn: 2018-04-12
requester: See above (Practitioner/us-core-practitioner-owen-oncologist)
dosageInstruction
Entry 21 - fullUrl = http://example.org/fhir/MedicationRequest/cancer-related-medication-request-paclitaxel-jenny-m
Resource MedicationRequest:
Generated Narrative: MedicationRequest
Resource MedicationRequest "cancer-related-medication-request-paclitaxel-jenny-m"
Texts
- Div * <div/> Procedure Intent Extension: Curative - procedure intent (qualifier value) (SNOMED CT#373808002)
status: ACTIVE
intent: ORDER
category: Outpatient (MedicationRequest Category Codes#outpatient)
subject: See above (Patient/cancer-patient-jenny-m)
authoredOn: 2018-04-12
requester: See above (Practitioner/us-core-practitioner-owen-oncologist)
dosageInstruction
Entry 22 - fullUrl = http://example.org/fhir/MedicationRequest/cancer-related-medication-request-anastrozole-jenny-m
Resource MedicationRequest:
Generated Narrative: MedicationRequest
Resource MedicationRequest "cancer-related-medication-request-anastrozole-jenny-m"
Texts
- Div * <div/> Procedure Intent Extension: Curative - procedure intent (qualifier value) (SNOMED CT#373808002)
status: ACTIVE
intent: ORDER
category: Community (MedicationRequest Category Codes#community)
subject: See above (Patient/cancer-patient-jenny-m)
authoredOn: 2018-09-30
requester: See above (Practitioner/us-core-practitioner-owen-oncologist)
dosageInstruction
Entry 23 - fullUrl = http://example.org/fhir/Observation/cancer-related-mcode-comorbidities-elixhauser-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "cancer-related-mcode-comorbidities-elixhauser-jenny-m"
Profile: Comorbidities Elixhauser Profile
Texts
- Div * <div/> status: FINAL
code: Elixhauser Comorbidity Panel (Requested LOINC Codes Code System#comorbidities-elixhauser)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
performer: See above (Practitioner/us-core-practitioner-owen-oncologist)
component
Comorbid Condition Reference Extension: Condition/us-core-condition-depression-jenny-m
code: Depression (Elixhauser comorbidity category) (Requested LOINC Codes Code System#DEPRESS)
value: Present (qualifier value) (SNOMED CT#52101004)
component
Comorbid Condition Reference Extension: Condition/us-core-condition-hypertension-jenny-m
code: Hypertension, complicated (Elixhauser comorbidity category) (Requested LOINC Codes Code System#HTN_CX)
value: Present (qualifier value) (SNOMED CT#52101004)
component
code: Arthropathies (Elixhauser comorbidity category) (Requested LOINC Codes Code System#ARTH)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Congestive heart failure (Elixhauser comorbidity category) (Requested LOINC Codes Code System#CHF)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Chronic pulmonary disease (Elixhauser comorbidity category) (Requested LOINC Codes Code System#LUNG_CHRONIC)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Diabetes without chronic complications (Elixhauser comorbidity category) (Requested LOINC Codes Code System#DIAB_UNCX)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Diabetes with chronic complications (Elixhauser comorbidity category) (Requested LOINC Codes Code System#DIAB_CX)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Obesity (Elixhauser comorbidity category) (Requested LOINC Codes Code System#OBESE)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Peripheral vascular disease (Elixhauser comorbidity category) (Requested LOINC Codes Code System#PERIVASC)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Pulmonary circulation disease (Elixhauser comorbidity category) (Requested LOINC Codes Code System#PULMCIRC)
value: Absent (qualifier value) (SNOMED CT#2667000)
component
code: Renal failure, moderate (Elixhauser comorbidity category) (Requested LOINC Codes Code System#RENLFL_MOD)
value: Absent (qualifier value) (SNOMED CT#2667000)
Entry 24 - fullUrl = http://example.org/fhir/Observation/bodyweight-jenny-m-2018-03-16
Resource Observation:
Generated Narrative: Observation
Resource Observation "bodyweight-jenny-m-2018-03-16"
Profile: Observation Body Weight Profile
Texts
- Div * <div/> status: FINAL
category: Vital Signs (Observation Category Codes#vital-signs)
code: Body weight (LOINC#29463-7)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-06
value: 155 lb (Details: UCUM code [lb_av] = '[lb_av]')
Entry 25 - fullUrl = http://example.org/fhir/Observation/us-core-observation-lab-neutrophils-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-observation-lab-neutrophils-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Neutrophils [#/volume] in Blood (LOINC#26499-4)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-05-20 00:00:00+0000
value: 3000 10*3/uL (Details: UCUM code 10*3/uL = '10*3/uL')
ReferenceRanges
- Low High AppliesTo * 2500 10*3/uL (Details: UCUM code 10*3/uL = '10*3/uL') 5000 10*3/uL (Details: UCUM code 10*3/uL = '10*3/uL') Normal Range (Observation Reference Range Meaning Codes#normal)
Entry 26 - fullUrl = http://example.org/fhir/Organization/us-core-organization-physician-services-inc
Resource Organization:
Generated Narrative: Organization
Resource Organization "us-core-organization-physician-services-inc"
Profile: US Core Organization Profile
Texts
- Div * <div/> active: true
type: Healthcare Provider (Organization type#prov)
name: Physician Services, Inc.
Contacts
- Telecom Address * ph: 999-999-9999(WORK) 123 Corporate Drive Anytown MA 12345 US
Entry 27 - fullUrl = http://example.org/fhir/Observation/us-core-smokingstatus-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-smokingstatus-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Social History (Observation Category Codes#social-history)
code: Tobacco smoking status (LOINC#72166-2)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
issued: 16 Mar 2018, 11:00:00 am
value: Smokes tobacco daily (finding) (SNOMED CT#449868002)
Entry 28 - fullUrl = http://example.org/fhir/Observation/us-core-procedure-biopsy-jenny-m
Resource Procedure:
Generated Narrative: Procedure
Resource Procedure "us-core-procedure-biopsy-jenny-m"
Profile: US Core Procedure Profile
Texts
- Div * <div/> status: COMPLETED
code: Biopsy of breast using ultrasonographic guidance (procedure) (SNOMED CT#723990008)
subject: See above (Patient/cancer-patient-jenny-m)
Performers
- Actor * Practitioner/us-core-practitioner-mary-obgyn " OBGYN" bodySite: Left breast structure (body structure) (SNOMED CT#80248007)
Entry 29 - fullUrl = http://example.org/fhir/Observation/us-core-procedure-mammogram-jenny-m
Resource Procedure:
Generated Narrative: Procedure
Resource Procedure "us-core-procedure-mammogram-jenny-m"
Profile: US Core Procedure Profile
Texts
- Div * <div/> status: COMPLETED
code: Mammography (procedure) (SNOMED CT#71651007)
subject: See above (Patient/cancer-patient-jenny-m)
Performers
- Actor * Practitioner/us-core-practitioner-jane-radiotech " RADIOLOGIST"
Entry 30 - fullUrl = http://example.org/fhir/FamilyMemberHistory/family-member-history-aunt-jenny-m
Resource FamilyMemberHistory:
Generated Narrative: FamilyMemberHistory
Resource FamilyMemberHistory "family-member-history-aunt-jenny-m"
Texts
- Div * <div/> status: COMPLETED
patient: See above (Patient/cancer-patient-jenny-m)
relationship: maternal aunt (RoleCode#MAUNT)
Conditions
- Code Onset[x] * Malignant tumor of ovary (disorder) (SNOMED CT#363443007) 69 a (Details: UCUM code a = 'a')
Entry 31 - fullUrl = http://example.org/fhir/Procedure/us-core-procedure-mammogram-jenny-m
Resource Procedure:
Generated Narrative: Procedure
Resource Procedure "us-core-procedure-mammogram-jenny-m"
Profile: US Core Procedure Profile
Texts
- Div * <div/> status: COMPLETED
code: Mammography (procedure) (SNOMED CT#71651007)
subject: See above (Patient/cancer-patient-jenny-m)
Performers
- Actor * Practitioner/us-core-practitioner-jane-radiotech " RADIOLOGIST"
Entry 32 - fullUrl = http://example.org/fhir/FamilyMemberHistory/family-member-history-uncle-jenny-m
Resource FamilyMemberHistory:
Generated Narrative: FamilyMemberHistory
Resource FamilyMemberHistory "family-member-history-uncle-jenny-m"
Texts
- Div * <div/> status: COMPLETED
patient: See above (Patient/cancer-patient-jenny-m)
relationship: paternal uncle (RoleCode#PUNCLE)
deceased: true
Conditions
- Code ContributedToDeath * Malignant tumor of pancreas (disorder) (SNOMED CT#363418001) true
Entry 33 - fullUrl = http://example.org/fhir/DiagnosticReport/us-core-diagnosticreport-lab-jenny-m
Resource DiagnosticReport:
Pathology report final diagnosis Narrative (Laboratory, Surgical Pathology)
Subject Jenny M female, DoB: 1965-01-01 ( Medical Record Number: MRN1234 (use: USUAL)) When For 2018-04-01 00:00:00+0000 Reported 2018-04-05 00:00:00+0000 Report Details
Code Value When For Status of invasion by tumor Negative (qualifier value) 2018-04-01 00:00:00+0000 Margin involvement in Breast tumor Uninvolved by invasive carcinoma 2018-04-01 00:00:00+0000 Sentinel lymph nodes with metastasis [#] in Cancer specimen 2018-04-01 00:00:00+0000 Size Tumor 2018-04-01 00:00:00+0000 DCIS intraductal extension in Breast cancer specimen Qualitative by Light microscopy DCIS present with extensive intraductal component (EIC) 2018-04-01 00:00:00+0000 HER2 [Interpretation] in Tissue Negative 2018-03-10 Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain Positive 2018-03-10 Progesterone receptor Ag [Presence] in Breast cancer specimen by Immune stain Negative 2018-03-10 Histologic grade [Score] in Breast cancer specimen Qualitative by Nottingham Nottingham grade 2 2018-04-01 00:00:00+0000
Entry 34 - fullUrl = http://example.org/fhir/Observation/observation-smoking-pack-years-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-smoking-pack-years-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Social History (Observation Category Codes#social-history)
code: Cigarette pack-years (observable entity) (SNOMED CT#401201003)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-03-16
value: 20 Pack-Years (Details: UCUM code {PackYears} = '{PackYears}')
Entry 35 - fullUrl = http://example.org/fhir/Observation/us-core-observation-lab-tumor-invasion-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-observation-lab-tumor-invasion-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Status of invasion by tumor (SNOMED CT#370052007)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-01 00:00:00+0000
value: Negative (qualifier value) (SNOMED CT#260385009)
Entry 36 - fullUrl = http://example.org/fhir/Observation/us-core-observation-lab-tumor-margins-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-observation-lab-tumor-margins-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Margin involvement in Breast tumor (LOINC#44669-0)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-01 00:00:00+0000
value: Uninvolved by invasive carcinoma (LOINC#LA27151-2)
Entry 37 - fullUrl = http://example.org/fhir/Observation/us-core-observation-lab-sentinel-nodes-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-observation-lab-sentinel-nodes-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Sentinel lymph nodes with metastasis [#] in Cancer specimen (LOINC#92832-5)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-01 00:00:00+0000
specimen: Specimen/tumor-specimen-left-breast-jenny-m
Components
- Code Value[x] * Lymph nodes examined [#] in Cancer specimen by Light microscopy (LOINC#92833-3) 3 Count (Details: UCUM code {Count} = '{Count}')
Entry 38 - fullUrl = http://example.org/fhir/Observation/tumor-size-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "tumor-size-jenny-m"
Profile: Tumor Size Profile
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: Size Tumor (LOINC#21889-1)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-01 00:00:00+0000
method: Pathology report gross observation (LOINC#24419-4)
specimen: Specimen/tumor-specimen-left-breast-jenny-m
Components
- Code Value[x] * Size.maximum dimension in Tumor (LOINC#33728-7) 2.5 centimeters (Details: UCUM code cm = 'cm')
Entry 39 - fullUrl = http://example.org/fhir/Observation/us-core-observation-lab-tumor-dcis-jenny-m
Resource Observation:
Generated Narrative: Observation
Resource Observation "us-core-observation-lab-tumor-dcis-jenny-m"
Texts
- Div * <div/> status: FINAL
category: Laboratory (Observation Category Codes#laboratory)
code: DCIS intraductal extension in Breast cancer specimen Qualitative by Light microscopy (LOINC#85336-6)
subject: See above (Patient/cancer-patient-jenny-m)
effective: 2018-04-01 00:00:00+0000
value: DCIS present with extensive intraductal component (EIC) (LOINC#LA27261-9)
Entry 40 - fullUrl = http://example.org/fhir/Practitioner/us-core-practitioner-owen-oncologist
Resource Practitioner:
Generated Narrative: Practitioner
Resource Practitioner "us-core-practitioner-owen-oncologist"
Profile: US Core Practitioner Profile
Texts
- Div * <div/> identifier: id: 9988776655
name: Owen Oncologist
gender: MALE
address: 123 Corporate Drive Anytown MA 12345 US (WORK)
Qualifications
- Code * Doctor of Medicine (degreeLicenseCertificate[2.7]#MD)
Entry 41 - fullUrl = http://example.org/fhir/Practitioner/us-core-practitioner-peter-pathologist
Resource Practitioner:
Generated Narrative: Practitioner
Resource Practitioner "us-core-practitioner-peter-pathologist"
Profile: US Core Practitioner Profile
Texts
- Div * <div/> identifier: id: 1122334455
name: Peter Pathologist
gender: FEMALE
address: 123 Corporate Drive Anytown MA 12345 US (WORK)
Qualifications
- Code * Doctor of Medicine (degreeLicenseCertificate[2.7]#MD)
Instance: mcode-patient-bundle-jenny-m
InstanceOf: MCODEPatientBundle
Title: "mcode-patient-bundle-jenny-m"
Description: "Extended example as a mCODE Patient Bundle"
Usage: #example
* type = #collection
* entry[0].fullUrl = "http://example.org/fhir/Patient/cancer-patient-jenny-m"
* entry[=].resource = cancer-patient-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Condition/primary-cancer-condition-jenny-m"
* entry[=].resource = primary-cancer-condition-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/MedicationRequest/cancer-related-medication-request-cyclophosphamide-jenny-m"
* entry[=].resource = cancer-related-medication-request-cyclophosphamide-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/MedicationRequest/cancer-related-medication-request-doxorubicin-jenny-m"
* entry[=].resource = cancer-related-medication-request-doxorubicin-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/MedicationRequest/cancer-related-medication-request-paclitaxel-jenny-m"
* entry[=].resource = cancer-related-medication-request-paclitaxel-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/MedicationRequest/cancer-related-medication-request-anastrozole-jenny-m"
* entry[=].resource = cancer-related-medication-request-anastrozole-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/cancer-disease-status-jenny-m"
* entry[=].resource = cancer-disease-status-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/genomic-variant-jenny-m"
* entry[=].resource = genomic-variant-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/DiagnosticReport/genomics-report-jenny-m"
* entry[=].resource = genomics-report-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Procedure/cancer-related-surgical-procedure-jenny-m"
* entry[=].resource = cancer-related-surgical-procedure-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/cancer-related-comorbidities-jenny-m"
* entry[=].resource = cancer-related-comorbidities-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Procedure/radiotherapy-treatment-summary-chest-wall-jenny-m"
* entry[=].resource = radiotherapy-treatment-summary-chest-wall-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tnm-clinical-stage-group-jenny-m"
* entry[=].resource = tnm-clinical-stage-group-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tnm-clinical-primary-tumor-category-jenny-m"
* entry[=].resource = tnm-clinical-primary-tumor-category-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tnm-clinical-regional-nodes-category-jenny-m"
* entry[=].resource = tnm-clinical-regional-nodes-category-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tnm-clinical-distant-metastases-category-jenny-m"
* entry[=].resource = tnm-clinical-distant-metastases-category-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Specimen/genomic-specimen-left-breast-jenny-m"
* entry[=].resource = genomic-specimen-left-breast-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/genomic-region-studied-jenny-m"
* entry[=].resource = genomic-region-studied-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/ecog-performance-status-jenny-m"
* entry[=].resource = ecog-performance-status-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tumor-marker-test-er-jenny-m"
* entry[=].resource = tumor-marker-test-er-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tumor-marker-test-pr-jenny-m"
* entry[=].resource = tumor-marker-test-pr-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tumor-marker-test-her2-jenny-m"
* entry[=].resource = tumor-marker-test-her2-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tumor-marker-test-oncotype-dx-jenny-m"
* entry[=].resource = tumor-marker-test-oncotype-dx-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/tumor-size-jenny-m"
* entry[=].resource = tumor-size-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-procedure-biopsy-jenny-m"
* entry[=].resource = us-core-procedure-biopsy-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/bodyweight-jenny-m-2018-03-16"
* entry[=].resource = bodyweight-jenny-m-2018-03-16
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-observation-lab-neutrophils-jenny-m"
* entry[=].resource = us-core-observation-lab-neutrophils-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Organization/us-core-organization-physician-services-inc"
* entry[=].resource = us-core-organization-physician-services-inc
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-smokingstatus-jenny-m"
* entry[=].resource = us-core-smokingstatus-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-procedure-mammogram-jenny-m"
* entry[=].resource = us-core-procedure-mammogram-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/FamilyMemberHistory/family-member-history-aunt-jenny-m"
* entry[=].resource = family-member-history-aunt-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Procedure/us-core-procedure-mammogram-jenny-m"
* entry[=].resource = us-core-procedure-mammogram-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/FamilyMemberHistory/family-member-history-uncle-jenny-m"
* entry[=].resource = family-member-history-uncle-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/DiagnosticReport/us-core-diagnosticreport-lab-jenny-m"
* entry[=].resource = us-core-diagnosticreport-lab-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/observation-smoking-pack-years-jenny-m"
* entry[=].resource = observation-smoking-pack-years-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-observation-lab-tumor-invasion-jenny-m"
* entry[=].resource = us-core-observation-lab-tumor-invasion-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-observation-lab-tumor-margins-jenny-m"
* entry[=].resource = us-core-observation-lab-tumor-margins-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-observation-lab-sentinel-nodes-jenny-m"
* entry[=].resource = us-core-observation-lab-sentinel-nodes-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Observation/us-core-observation-lab-tumor-dcis-jenny-m"
* entry[=].resource = us-core-observation-lab-tumor-dcis-jenny-m
* entry[+].fullUrl = "http://example.org/fhir/Practitioner/us-core-practitioner-owen-oncologist"
* entry[=].resource = us-core-practitioner-owen-oncologist
* entry[+].fullUrl = "http://example.org/fhir/Practitioner/us-core-practitioner-peter-pathologist"
* entry[=].resource = us-core-practitioner-peter-pathologist