minimal Common Oncology Data Elements (mCODE) Implementation Guide
1.16.0 - STU Release 2 (Ballot Version)

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v1.16.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: genomic-region-studied-jenny-m - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="genomic-region-studied-jenny-m"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomic-region-studied"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative</b></p><p></p><p><b>category</b>: <span title="Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>code</b>: <span title="Codes: {http://loinc.org 53041-0}">DNA region of interest panel</span></p><p><b>subject</b>: <a href="Patient-cancer-patient-jenny-m.html">Generated Summary: Medical Record Number: MRN1234 (USUAL); Jenny M ; gender: female; birthDate: 1965-01-01</a></p><p><b>effective</b>: 2018-03-15</p><p><b>issued</b>: Mar 15, 2018 12:00:01 AM</p><h3>Components</h3><table class="grid"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td><span title="Codes: {http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes: {http://www.genenames.org 1100}, {http://www.genenames.org 1101}, {http://www.genenames.org 1748}, {http://www.genenames.org 26144}, {http://www.genenames.org 9588}, {http://www.genenames.org 11389}, {http://www.genenames.org 11998}">BRCA1</span></td></tr></table></div>
  </text>
  <status value="final"/>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="53041-0"/>
      <display value="DNA region of interest panel"/>
    </coding>
  </code>
  <subject>
    <reference value="Patient/cancer-patient-jenny-m"/>
  </subject>
  <effectiveDateTime value="2018-03-15"/>
  <issued value="2018-03-15T00:00:01+00:00"/>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="48018-6"/>
        <display value="Gene studied [ID]"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="1100"/>
        <display value="BRCA1"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="1101"/>
        <display value="BRCA2"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="1748"/>
        <display value="CDH1"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="26144"/>
        <display value="PALB2"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="9588"/>
        <display value="PTEN"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="11389"/>
        <display value="STK11"/>
      </coding>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="11998"/>
        <display value="TP53"/>
      </coding>
    </valueCodeableConcept>
  </component>
</Observation>