minimal Common Oncology Data Elements (mCODE) Implementation Guide
1.16.0 - STU Release 2 (Ballot Version)

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v1.16.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example Observation: cancer-genetic-variant-somatic-single-nucleotide

Generated Narrative

category: Laboratory

code: Genetic variant assessment

subject: Generated Summary: Medical Record Number: m123 (USUAL); John B. Anyperson ; gender: male; birthDate: 1951-01-20

effective: 2019-04-01

value: Present

interpretation: Positive (qualifier value)

method: Sequencing

component

code: Gene studied [ID]

value: STK11

component

code: Discrete genetic variant

value: NC_000019.8:g.1171707G>A

component

code: Genomic DNA change (gHGVS)

value: NC_000019.8:g.1171707G>A

component

code: Genomic source class [Type]

value: Somatic