minimal Common Oncology Data Elements (mCODE) Implementation Guide
1.16.0 - STU Release 2 (Ballot Version)

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v1.16.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example Observation: cancer-genetic-variant-jenny-m

Generated Narrative

category: Laboratory

code: Genetic variant assessment

subject: Generated Summary: Medical Record Number: MRN1234 (USUAL); Jenny M ; gender: female; birthDate: 1965-01-01

effective: 2018-03-15

value: Present

method: Sequencing

component

code: Gene studied [ID]

value: PALB2

component

code: Discrete genetic variant

value: NM_024675.3(PALB2):c.3549C>A (p.Tyr1183Ter)

component

code: Genomic DNA change (gHGVS)

value: NC_000016.10:g.23603471G>T

component

code: Genomic source class [Type]

value: Somatic