HL7 FHIR® Implementation Guide: Breast Cancer Data, Release 1 - US Realm (Draft for Comment)

This page is part of the Breast Cancer Data Logical Models and FHIR Profiles (v0.1.0: STU 1 Draft) based on FHIR R3. . For a full list of available versions, see the Directory of published versions

SpecimenModel - Detailed Descriptions

Definitions for cimi-Specimen-model.

cimi-Specimen-model
Definition

A specimen is a substance, physical object, or collection of objects, that the laboratory considers a single discrete, uniquely identified unit that is the subject of one or more steps in the laboratory workflow. A specimen may include multiple physical pieces as long as they are considered a single unit within the laboratory workflow. A specimen results from one to many specimen collection procedures, and may be contained in multiple specimen containers. Specimen may have one or more processing activities.

CIMI Alignment: This class has been cut down to parts relevant to the current oncology ballot. The attribute parentSpecimenIdentifier has been changed from an Identifier to a reference to a Specimen, to make it possible to map to FHIR.

Control0..*
cimi-Specimen-model.type
Definition

The most specific code (lowest level term) describing the kind or sort of thing being represented.

Control1..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-Type-model
cimi-Specimen-model.sourceSpecimen
Definition

Identifier for the source specimen from which this specimen was derived.

CIMI Alignment: In CIMI V0.0.4, this attribute is called parentSpecimenIdentifier (datatype Identifier). The corresponding element in FHIR (Specimen.parent) is type ref(Specimen). It is impossible to map Idenfier to Specimen, so the datatype of this element has been changed to make the mapping feasible.

Control0..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-SourceSpecimen-model
cimi-Specimen-model.receivedTime
Definition

Time received by accepting facility or unit.

Control0..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/shr-core-ReceivedTime-model
cimi-Specimen-model.collectionTime
Definition

When the sample was obtained, as a specific time or time period.

CIMI Alignment: Specimen collection time seems to be missing in CIMI V0.0.4. The time may be in the CollectionProcedure, but if the specimen collection time is recorded in Performance.Attribution (a list of actions), it would be nearly impossible to create a mapping.

Control0..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-CollectionTime-model
cimi-Specimen-model.collectionMethod
Definition

How the specimen was obtained.

Control0..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-CollectionMethod-model
cimi-Specimen-model.collectionSite
Definition

The body site where specimen was collected

Control0..1
Typehttp://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-CollectionSite-model