FHIR Release 3 (STU)

This page is part of the FHIR Specification (v3.0.2: STU 3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension: AminoAcidChangeName

Orders and Observations Work Group

Maturity Level: 1

Informative

Use Context: Any

URL for this extension:

http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Human Genome Variation Society (HGVS) nomenclature for an amino acid change. Reference sequence ID used for HGVS naming must be annotated. An amino acid is a sequence feature that corresponds to a single amino acid residue in a polypeptide (SO:0001237). LOINC Code: (48005-3).

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName AminoAcidChangeName: Human Genome Variation Society (HGVS) nomenclature for an amino acid change. Reference sequence ID used for HGVS naming must be annotated. An amino acid is a sequence feature that corresponds to a single amino acid residue in a polypeptide ([SO:0001237](http://www.sequenceontology.org/browser/current_svn/term/SO:0001237)). LOINC Code: ([48005-3](http://loinc.org/48005-3)). Binding: ???? (preferred) Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName AminoAcidChangeName: Human Genome Variation Society (HGVS) nomenclature for an amino acid change. Reference sequence ID used for HGVS naming must be annotated. An amino acid is a sequence feature that corresponds to a single amino acid residue in a polypeptide ([SO:0001237](http://www.sequenceontology.org/browser/current_svn/term/SO:0001237)). LOINC Code: ([48005-3](http://loinc.org/48005-3)). Use on element: Observation
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName"
valueCodeableConcept	0..1	CodeableConcept	Value of extension Binding: ???? (preferred)
Documentation for this format

XML Template

<!-- AminoAcidChangeName -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 0..1 CodeableConcept Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // AminoAcidChangeName
  // from Element: extension
    "extension" : [ //  sliced by value:url  in the specified orderOpen
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName", // R! 
    "valueCodeableConcept" : { CodeableConcept } //Value of extension
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName AminoAcidChangeName: Human Genome Variation Society (HGVS) nomenclature for an amino acid change. Reference sequence ID used for HGVS naming must be annotated. An amino acid is a sequence feature that corresponds to a single amino acid residue in a polypeptide ([SO:0001237](http://www.sequenceontology.org/browser/current_svn/term/SO:0001237)). LOINC Code: ([48005-3](http://loinc.org/48005-3)). Binding: ???? (preferred) Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName AminoAcidChangeName: Human Genome Variation Society (HGVS) nomenclature for an amino acid change. Reference sequence ID used for HGVS naming must be annotated. An amino acid is a sequence feature that corresponds to a single amino acid residue in a polypeptide ([SO:0001237](http://www.sequenceontology.org/browser/current_svn/term/SO:0001237)). LOINC Code: ([48005-3](http://loinc.org/48005-3)). Use on element: Observation
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName"
valueCodeableConcept	0..1	CodeableConcept	Value of extension Binding: ???? (preferred)
Documentation for this format

XML Template

<!-- AminoAcidChangeName -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 0..1 CodeableConcept Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // AminoAcidChangeName
  // from Element: extension
    "extension" : [ //  sliced by value:url  in the specified orderOpen
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsAminoAcidChangeName", // R! 
    "valueCodeableConcept" : { CodeableConcept } //Value of extension
  }

Constraints

ele-1: All FHIR elements must have a @value or children (xpath: @value|f:*|h:div)
ext-1: Must have either extensions or value[x], not both (xpath: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')]))