Release 4B

This page is part of the FHIR Specification (v4.3.0: R4B - STU). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4

Observation-example-genetics-brcapat.ttl

Orders and Observations Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Encounter, Patient, Practitioner, RelatedPerson

Raw Turtle (+ also see Turtle/RDF Format Specification)

Example of breast cancer genetic observation

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-brcapat> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-genetics-brcapat"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;example-genetics-brcapat&quot; </p></div><p><b>Gene</b>: BRCA <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (nuccore#KX470182.1)</span></p><p><b>status</b>: final</p><p><b>code</b>: The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#59041-4)</span></p><p><b>subject</b>: <a href=\"todo.html\">Patient/brcapat: Patient1 with Breast Cancer FamilyHistory</a></p><p><b>effective</b>: 2021-03-03T14:50:23-05:00</p><p><b>device</b>: <a href=\"device-example.html\">Device/example</a></p></div>"
  ];
  fhir:DomainResource.extension [
     fhir:index 0;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ];
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "https://www.ncbi.nlm.nih.gov/nuccore" ];
         fhir:Coding.code [ fhir:value "KX470182.1" ];
         fhir:Coding.display [ fhir:value "BRCA" ]
       ]
     ]
  ], [
     fhir:index 1;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" ];
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://browser.ihtsdotools.org/" ];
         fhir:Coding.code [ fhir:value "413581001" ];
         fhir:Coding.display [ fhir:value "Unknown racial group" ]
       ]
     ]
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:59041-4;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "59041-4" ];
       fhir:Coding.display [ fhir:value "The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal" ]
     ]
  ];
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/brcapat>;
     fhir:Reference.reference [ fhir:value "Patient/brcapat" ];
     fhir:Reference.display [ fhir:value "Patient1 with Breast Cancer FamilyHistory" ]
  ];
  fhir:Observation.effectiveDateTime [ fhir:value "2021-03-03T14:50:23-05:00"^^xsd:dateTime];
  fhir:Observation.device [
     fhir:link <http://hl7.org/fhir/Device/example>;
     fhir:Reference.reference [ fhir:value "Device/example" ]
  ] .

<http://hl7.org/fhir/Patient/brcapat> a fhir:Patient .

<http://hl7.org/fhir/Device/example> a fhir:Device .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-genetics-brcapat.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Observation/example-genetics-brcapat.ttl> .

# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.