Observation-example-genetics-brcapat.json

Example of breast cancer genetic observation

{
  "resourceType": "Observation",
  "id": "example-genetics-brcapat",
  "text": {
    "status": "extensions",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;example-genetics-brcapat&quot; </p></div><p><b>Gene</b>: BRCA <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (nuccore#KX470182.1)</span></p><p><b>status</b>: final</p><p><b>code</b>: The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#59041-4)</span></p><p><b>subject</b>: <a href=\"todo.html\">Patient/brcapat: Patient1 with Breast Cancer FamilyHistory</a></p><p><b>effective</b>: 2021-03-03T14:50:23-05:00</p><p><b>device</b>: <a href=\"device-example.html\">Device/example</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "https://www.ncbi.nlm.nih.gov/nuccore",
            "code": "KX470182.1",
            "display": "BRCA"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://browser.ihtsdotools.org/",
            "code": "413581001",
            "display": "Unknown racial group"
          }
        ]
      }
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "59041-4",
        "display": "The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal"
      }
    ]
  },
  "subject": {
    "reference": "Patient/brcapat",
    "display": "Patient1 with Breast Cancer FamilyHistory"
  },
  "effectiveDateTime": "2021-03-03T14:50:23-05:00",
  "device": {
    "reference": "Device/example"
  }
}