Observation-example-TPMT-haplotype-one.json

Example of a TPMT haplotype observation

{
  "resourceType": "Observation",
  "id": "example-TPMT-haplotype-one",
  "text": {
    "status": "extensions",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;example-TPMT-haplotype-one&quot; </p></div><p><b>Gene</b>: TPMT <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-hgnc.html\">HUGO Gene Nomenclature</a>#12014)</span></p><p><b>status</b>: unknown</p><p><b>code</b>: Haplotype Call <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#363779003 &quot;The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genotype determination&quot;)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example: E***********</a> &quot;Peter CHALMERS&quot;</p><p><b>effective</b>: 2013-04-03T15:30:10+01:00</p><p><b>value</b>: *1 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (pharmakb.org#PA166128347)</span></p><p><b>device</b>: <a href=\"device-example.html\">Device/example</a></p><p><b>derivedFrom</b>: <a href=\"molecularsequence-example-tpmt-one.html\">MolecularSequence/example-TPMT-one</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "12014",
            "display": "TPMT"
          }
        ]
      }
    }
  ],
  "status": "unknown",
  "code": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "363779003",
        "display": "The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance. Genotype determination"
      }
    ],
    "text": "Haplotype Call"
  },
  "subject": {
    "reference": "Patient/example",
    "display": "E***********"
  },
  "effectiveDateTime": "2013-04-03T15:30:10+01:00",
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://pharmakb.org",
        "code": "PA166128347",
        "display": "*1"
      }
    ]
  },
  "device": {
    "reference": "Device/example"
  },
  "derivedFrom": [
    {
      "reference": "MolecularSequence/example-TPMT-one"
    }
  ]
}