DiagnosticsThis page is part of the FHIR Specification v6.0.0-ballot2: Release 6 Ballot (2nd Draft) (see Ballot Notes). The current version is 5.0.0. For a full list of available versions, see the Directory of published versions 
| Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: No defined compartments |
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Simple sequence example
@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:MolecularDefinition ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "example"] ; #
fhir:type [ fhir:v "dna"] ; #
fhir:representation ( [
fhir:literal [
fhir:value [ fhir:v "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ]
] ; # <encoding>\n <coding>\n <system value=\"http:\/\/terminology.hl7.org\/CodeSystem\/...\"\/>\n <code value=\"\"\/>\n <display value=\"\"\/>\n <\/coding>\n <text value=\"\"\/>\n <\/encoding>
fhir:resolvable [
fhir:contentType [ fhir:v "text/html" ] ;
fhir:url [ fhir:v "https://www.ncbi.nlm.nih.gov/nuccore/MW716256.1?report=fasta"^^xsd:anyURI ]
] ;
fhir:extracted [
fhir:startingMolecule [
fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-extracted" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Starting Sequence Resource" ]
] ;
fhir:start [ fhir:v "0"^^xsd:integer ] ;
fhir:end [ fhir:v "745"^^xsd:integer ] ;
fhir:coordinateSystem [
fhir:coding ( [
a loinc:LA30100-4 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA30100-4" ] ;
fhir:display [ fhir:v "0-based interval counting" ]
] ) ;
fhir:text [ fhir:v "0-based interval counting" ]
] ;
fhir:reverseComplement [ fhir:v "false"^^xsd:boolean ]
] ;
fhir:concatenated [
fhir:sequenceElement ( [
fhir:sequence [
fhir:reference [ fhir:v "MolecularDefinition/example-sequence0-2b-concatenated" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Sequence-of index 0-Resource for concatenated sequence example" ]
] ;
fhir:ordinalIndex [ fhir:v "0"^^xsd:integer ]
] [
fhir:sequence [
fhir:reference [ fhir:v "MolecularDefinition/example-sequence1-2b-concatenated" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Sequence-of index 1-Resource for concatenated sequence example" ]
] ;
fhir:ordinalIndex [ fhir:v "1"^^xsd:integer ]
] [
fhir:sequence [
fhir:reference [ fhir:v "MolecularDefinition/example-sequence2-2b-concatenated" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Sequence-of index 2-Resource for concatenated sequence example" ]
] ;
fhir:ordinalIndex [ fhir:v "2"^^xsd:integer ]
] )
] ;
fhir:relative [
fhir:startingMolecule [
fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-relative" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Starting Sequence Resource" ]
] ;
fhir:edit ( [
fhir:coordinateSystem [
fhir:coding ( [
a loinc:LA30100-4 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA30100-4" ] ;
fhir:display [ fhir:v "0-based interval counting" ]
] ) ;
fhir:text [ fhir:v "0-based interval counting" ]
] ;
fhir:start [ fhir:v "0"^^xsd:integer ] ;
fhir:end [ fhir:v "725"^^xsd:integer ] ;
fhir:replacementMolecule [
fhir:reference [ fhir:v "MolecularDefinition/example-replacement-sequence" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Replacement Sequence Resource" ]
] ;
fhir:replacedMolecule [
fhir:reference [ fhir:v "MolecularDefinition/example-replaced-sequence" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Replaced Sequence Resource" ]
]
] )
]
] )] . # <subject>
# <reference value="Patient/example"/>
# </subject> , <formatted>
# <contentType value="application/json"/>
# <url value="http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/json"/>
# <title value="GA4GH API"/>
# </formatted> , <repeated>
# <sequenceMotif>
# <reference value="MolecularDefinition/SequenceMotifExample"/>
# <type value="MolecularDefinition"/>
# <display value="Sequence Motif Resource"/>
# </sequenceMotif>
# <copyCount value="5"/>
# </repeated>
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR ®© HL7.org 2011+. FHIR R6 hl7.fhir.core#6.0.0-ballot2 generated on Mon, Aug 12, 2024 16:59+0800.
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