This page is part of the FHIR Specification v6.0.0-ballot1: Release 6 Ballot (1st Draft) (see Ballot Notes). The current version is 5.0.0. For a full list of available versions, see the Directory of published versions
Bacterial Isolate from Stool sample
{
"resourceType" : "Specimen",
"id" : "isolate",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen</b><a name=\"isolate\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Specimen "isolate" </p></div><p><b>accessionIdentifier</b>: id:\u00a0X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#429951000124103)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> "Peter CHALMERS"</p><p><b>receivedTime</b>: 2015-08-18T07:03:00Z</p><p><b>parent</b>: <a name=\"stool\"> </a></p><blockquote><p/><p><a name=\"stool\"> </a></p><p><b>accessionIdentifier</b>: id:\u00a0X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: Stool specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119339001)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> "Peter CHALMERS"</p><p><b>receivedTime</b>: 2015-08-16T07:03:00Z</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td style=\"display: none\">*</td><td><span>: Patient</span></td><td><span title=\" the time of collection is usually required. Usually a point in time, but can be a period \n (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) \">2011-08-16T06:15:00Z</span></td><td><span title=\" method is usually implied by type \">Line, Venous <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.4.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#LNV)</span></span></td></tr></table></blockquote><p><b>role</b>: Patient <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#p)</span></p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"practitioner-example-f202-lm.html\">Practitioner/f202</a> "Luigi Maas"</td><td><span title=\" the time of collection is usually required. Usually a point in time, but can be a period \n (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) \">2015-08-16T07:03:00Z</span></td><td><span title=\" method is usually implied by type \">Plates, Blood Agar <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.4.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#BAP)</span></span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"
},
"contained" : [{
"resourceType" : "Specimen",
"id" : "stool",
"accessionIdentifier" : {
"system" : "http://lab.acme.org/specimens/2015",
"value" : "X352356"
},
"status" : "unavailable",
"type" : {
"coding" : [{
"system" : "http://snomed.info/sct",
"code" : "119339001",
"display" : "Stool specimen"
}]
},
"subject" : {
"reference" : "Patient/example"
},
"receivedTime" : "2015-08-16T07:03:00Z",
"collection" : {
"collector" : {
"display" : "Patient"
},
"collectedDateTime" : "2011-08-16T06:15:00Z",
"method" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
"code" : "LNV"
}]
}
}
}],
"accessionIdentifier" : {
"system" : "http://lab.acme.org/specimens/2011",
"value" : "X352356-ISO1"
},
"status" : "available",
"type" : {
"coding" : [{
"system" : "http://snomed.info/sct",
"code" : "429951000124103",
"display" : "Bacterial isolate specimen"
}]
},
"subject" : {
"reference" : "Patient/example"
},
"receivedTime" : "2015-08-18T07:03:00Z",
"parent" : [{
"reference" : "#stool"
}],
"role" : [{
"coding" : [{
"code" : "p",
"display" : "Patient"
}]
}],
"collection" : {
"collector" : {
"reference" : "Practitioner/f202"
},
"collectedDateTime" : "2015-08-16T07:03:00Z",
"method" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0488",
"code" : "BAP"
}]
}
},
"note" : [{
"text" : "Patient dropped off specimen"
}]
}
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.