Observation-example-genetics-brcapat.xml

Example of breast cancer genetic observation (id = "example-genetics-brcapat")

<?xml version="1.0" encoding="UTF-8"?>

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-genetics-brcapat"/> 
  
  <text> <status value="extensions"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <p> <b> Gene</b> : <span> BRCA</span> </p> <p/>  <p> <b> code</b> : <span> BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method
           Nominal</span> </p> <p> <b> subject</b> : <a> Patient1 with Breast Cancer FamilyHistory</a> </p> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="https://www.ncbi.nlm.nih.gov/nuccore"/> 
        <code value="KX470182.1"/> 
        <display value="BRCA"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 

  <extension url="http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity">
    <valueCodeableConcept> 
      <coding> 
          <system value="http://browser.ihtsdotools.org/"/> 
          <code value="413581001"/> 
          <display value="Unknown racial group"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  
  <status value="final"/> 
  
  <code> 
    <coding> 
      <system value="http://loinc.org"/> 
      <code value="59041-4"/> 
      <display value="BRCA1+BRCA2 gene mutations tested for in Blood or Tissue by Molecular genetics method
       Nominal"/> 
    </coding> 
  </code> 
  
  <subject> 
      <reference value="Patient/brcapat"/> 
      <display value="Patient1 with Breast Cancer FamilyHistory"/> 
  </subject> 

</Observation>