Observation-example-genetics-1.xml

Genetics example 1 (id = "example-genetics-1")

<?xml version="1.0" encoding="UTF-8"?>

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-genetics-1"/> <!--   extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariantName"
   >
    <valueCodeableConcept> 
      <text value="NG_007726.3:g.146252T&gt;G" />
    </valueCodeableConcept>
  </extension   --><text> <status value="extensions"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <p> <b> Gene</b> : <span> EGFR</span> </p> <p> <b> DNARegionName</b> : Exon 21</p> <p> <b> GenomicSourceClass</b> : <span> somatic</span> </p> <p/>  <p> <b> code</b> : <span> Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
           associated observations that can be reported with a molecular genetics analysis result.</span> </p> <p> <b> subject</b> : <a> Molecular Lab Patient ID: HOSP-23456. Generated Summary: Medical record number: 12345
           (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN);
           , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate:
           1974-12-25; </a> </p> <p> <b> issued</b> : 4 Apr. 2013, 1:30:10 am</p> <p> <b> performer</b> : <a> Molecular Diagnostics Laboratory. Generated Summary: id: 23; active; Adam Careful </a> </p> <p> <b> value</b> : <span> Positive</span> </p> <p> <b> specimen</b> : <a> Molecular Specimen ID: MLD45-Z4-1234</a> </p> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://www.genenames.org"/> 
        <code value="3236"/> 
        <display value="EGFR"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName">
    <valueString value="Exon 21"/> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://loinc.org"/> 
        <code value="LA6684-0"/> 
        <display value="somatic"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <status value="final"/> 
  <code> 
    <coding> 
      <system value="http://loinc.org"/> 
      <code value="55233-1"/> 
      <display value="Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/> 
    </coding> 
  </code> 
  <subject> 
    <reference value="Patient/example"/> 
    <display value="Molecular Lab Patient ID: HOSP-23456"/> 
  </subject> 
  <issued value="2013-04-03T15:30:10+01:00"/> 
  <performer> 
    <reference value="Practitioner/example"/> 
    <display value="Molecular Diagnostics Laboratory"/> 
  </performer> 
  <valueCodeableConcept> 
    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="10828004"/> 
      <display value="Positive"/> 
    </coding> 
  </valueCodeableConcept> 
  <specimen> 
    <reference value="Specimen/genetics-example1-somatic"/> 
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/> 
  </specimen> 
</Observation>