Observation-example-TPMT-haplotype-one.ttl

Example of a TPMT haplotype observation

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-TPMT-haplotype-one> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-TPMT-haplotype-one"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>Gene</b>: <span>TPMT</span></p><p><b>status</b>: unknown</p><p><b>code</b>: <span>Haplotype Call</span></p><p><b>subject</b>: <a>E***********. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>issued</b>: 4 Apr. 2013, 1:30:10 am</p><p><b>value</b>: <span>*1</span></p><p><b>derivedFrom</b>: <a>Generated Summary: type: dna; 1; observedSeq: T-C-C-C-A-C-C-C</a></p></div>"
  ];
  fhir:DomainResource.extension [
     fhir:index 0;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ];
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://www.genenames.org" ];
         fhir:Coding.code [ fhir:value "12014" ];
         fhir:Coding.display [ fhir:value "TPMT" ]
       ]
     ]
  ];
  fhir:Observation.status [ fhir:value "unknown"];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:363779003;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "363779003" ];
       fhir:Coding.display [ fhir:value "Genotype determination" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Haplotype Call" ]
  ];
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/example>;
     fhir:Reference.reference [ fhir:value "Patient/example" ];
     fhir:Reference.display [ fhir:value "E***********" ]
  ];
  fhir:Observation.issued [ fhir:value "2013-04-03T15:30:10+01:00"^^xsd:dateTime];
  fhir:Observation.valueCodeableConcept [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://pharmakb.org" ];
       fhir:Coding.code [ fhir:value "PA166128347" ];
       fhir:Coding.display [ fhir:value "*1" ]
     ]
  ];
  fhir:Observation.derivedFrom [
     fhir:index 0;
     fhir:link <http://hl7.org/fhir/MolecularSequence/example-TPMT-one>;
     fhir:Reference.reference [ fhir:value "MolecularSequence/example-TPMT-one" ]
  ] .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/MolecularSequence/example-TPMT-one> a fhir:MolecularSequence .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/example-TPMT-haplotype-one.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Observation/example-TPMT-haplotype-one.ttl> .

# -------------------------------------------------------------------------------------