Release 5 Preview #1

This page is part of the FHIR Specification (v4.2.0: R5 Preview #1). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3

Sequence-graphic-example-3.json

Clinical Genomics Work Group

Maturity Level: N/A

Standards Status: Informative

Compartments: Patient

Raw JSON (canonical form + also see JSON Format Specification)

MolecularSequence Graphic example-3

{
  "resourceType": "MolecularSequence",
  "id": "graphic-example-3",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-3</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqPointer</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td><a>MolecularSequence/graphic-example-5</a></td><td>watson</td><td>128273732</td><td>128273736</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td><td><b>Cigar</b></td></tr><tr><td>*</td><td>1282737234</td><td>128273736</td><td>GA</td><td>AT</td><td>2M</td></tr></table><p><b>pointer</b>: <a>MolecularSequence/graphic-example-4</a></p></div>"
  },
  "type": "dna",
  "coordinateSystem": 0,
  "referenceSeq": {
    "referenceSeqPointer": {
      "reference": "MolecularSequence/graphic-example-5"
    },
    "strand": "watson",
    "windowStart": 128273732,
    "windowEnd": 128273736
  },
  "variant": [
    {
      "start": 1282737234,
      "end": 128273736,
      "observedAllele": "GA",
      "referenceAllele": "AT",
      "cigar": "2M"
    }
  ],
  "pointer": [
    {
      "reference": "MolecularSequence/graphic-example-4"
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.