Observation-example-phenotype.json

Example of phenotype data

{
  "resourceType": "Observation",
  "id": "example-phenotype",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-phenotype</p><p><b>status</b>: final</p><p><b>code</b>: CYP2C9 gene product metabolic activity interpretation <span>(Details : {LOINC code '79716-7' = 'CYP2C9 gene product metabolic activity interpretation in Blood or Tissue Qualitative by CPIC', given as 'CYP2C9 gene product metabolic activity interpretation'})</span></p><p><b>subject</b>: <a>J*********** C***********</a></p><p><b>issued</b>: 3 Apr. 2013, 3:30:10 pm</p><p><b>value</b>: Normal metabolizer <span>(Details : {LOINC code 'LA25391-6' = 'Normal metabolizer', given as 'Normal metabolizer'})</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p><p><b>derivedFrom</b>: <a>Observation/example-diplotype1</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "2623",
            "display": "CYP2C9"
          }
        ]
      }
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "79716-7",
        "display": "CYP2C9 gene product metabolic activity interpretation"
      }
    ]
  },
  "subject": {
    "reference": "Patient/727127",
    "display": "J*********** C***********"
  },
  "issued": "2013-04-03T15:30:10+01:00",
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "LA25391-6",
        "display": "Normal metabolizer"
      }
    ]
  },
  "specimen": {
    "reference": "Specimen/genetics-example1-somatic",
    "display": "Molecular Specimen ID: MLD45-Z4-1234"
  },
  "derivedFrom": [
    {
      "reference": "Observation/example-diplotype1"
    }
  ]
}