MolecularSequence for CWL workflow project
{
"resourceType" : "Provenance",
"id" : "example-cwl",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n\t\t\t<p>\n\t\t\t\t<b>Generated Narrative with Details</b>\n\t\t\t</p><p>\n\t\t\t\t<b>id</b>: cwl-example</p><p>\n\t\t\t\t<b>target</b>: <a href=\"sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n\t\t\t</p><p>\n\t\t\t\t<b>period</b>: Nov 30, 2016 --> (ongoing)</p><p>\n\t\t\t\t<b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n\t\t\t\t<b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n high throughput sequencing data.')</p>\n\t\t\t<h3>Agents</h3>\n\t\t\t<table>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>-</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Role</b>\n\t\t\t\t\t</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Who</b>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>*</td>\n\t\t\t\t\t<td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<a href=\"patient-example.html\">Patient/example</a>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t</table>\n\t\t\t<h3>Entities</h3>\n\t\t\t<table>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>-</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Role</b>\n\t\t\t\t\t</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<b>Reference</b>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t\t<tr>\n\t\t\t\t\t<td>*</td>\n\t\t\t\t\t<td>source</td>\n\t\t\t\t\t<td>\n\t\t\t\t\t\t<a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n\t\t\t\t\t</td>\n\t\t\t\t</tr>\n\t\t\t</table>\n\t\t</div>"
},
"target" : [{
"reference" : "MolecularSequence/example-pgx-1/_history/1"
}],
"occurredPeriod" : {
"start" : "2016-11-30"
},
"recorded" : "2016-12-01T08:12:14+10:00",
"activity" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v3-DataOperation",
"code" : "CREATE",
"display" : "create"
}],
"text" : "profiling Short Tandem Repeats (STRs) from high throughput sequencing data."
},
"agent" : [{
"type" : {
"coding" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v3-ParticipationType",
"code" : "AUT"
}]
},
"who" : {
"reference" : "Patient/example"
}
}],
"entity" : [{
"role" : "source",
"what" : {
"identifier" : {
"type" : {
"coding" : [{
"system" : "https://github.com/common-workflow-language/workflows",
"code" : "CWL",
"display" : "lobSTR"
}]
},
"value" : "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl"
}
}
}]
}
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.