Extensions for Using Data Elements from FHIR R5 in FHIR R4
0.1.0 - STU International flag

Extensions for Using Data Elements from FHIR R5 in FHIR R4 - Downloaded Version null See the Directory of published versions

ValueSet: R5GenomicstudyTypeForR4

Official URL: http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-type-for-R4 Version: 0.1.0
Standards status: Trial-use Maturity Level: 1 Responsible: Clinical Genomics Computable Name: R5GenomicstudyTypeForR4

This cross-version ValueSet represents content from http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0 for use in FHIR R4.

This value set is part of the cross-version definitions generated to enable use of the value set http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0 as defined in FHIR R5 in FHIR R4.

The source value set is bound to the following FHIR R5 elements:

  • GenomicStudy.type

Note that all concepts are included in this cross-version definition because no concepts have compatible representations

Following are the generation technical comments:

FHIR ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0, defined in FHIR R5 does not have any mapping to FHIR R4

References

Logical Definition (CLD)

  • Include these codes as defined in http://hl7.org/fhir/genomicstudy-type version 📍5.0.0
    CodeDisplayDefinition
    alt-splcAlternative splicing detectionIdentification of multiple different processed mRNA transcripts from the same DNA template
    chromatinChromatin conformationAnalysis of the spacial organization of chromatin within a cell
    cnvCNV detectionDetection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence
    epi-alt-dnaEpigenetic Alterations -DNA methylationDetection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription
    epi-alt-histEpigenetic Alterations - histone modificationsDetection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression
    fam-var-segrFamilial variant segregationDetermining if a variant identified in an individual is present in other family members
    func-varFunctional variation detectionDetection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence
    gene-expressionGene expression profilingMeasurement and characterization of activity from all gene products
    post-trans-modPost-translational Modification IdentificationDetection of biochemical modifications covalently bound to the amino acid monomers of a processed protein
    snpSNP DetectionDetermination of which nucleotide is base present at a known variable location of the genomic sequence
    strSTR countQuantification of the number of sequential microsatellite units in a repetitive sequence region
    struc-varStructural variation detectionDetection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence

 

Expansion

This value set expansion contains 12 concepts.

SystemVersionCodeDisplayDefinitionJSONXML
http://hl7.org/fhir/genomicstudy-type5.0.0  alt-splcAlternative splicing detectionIdentification of multiple different processed mRNA transcripts from the same DNA template
http://hl7.org/fhir/genomicstudy-type5.0.0  chromatinChromatin conformationAnalysis of the spacial organization of chromatin within a cell
http://hl7.org/fhir/genomicstudy-type5.0.0  cnvCNV detectionDetection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence
http://hl7.org/fhir/genomicstudy-type5.0.0  epi-alt-dnaEpigenetic Alterations -DNA methylationDetection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription
http://hl7.org/fhir/genomicstudy-type5.0.0  epi-alt-histEpigenetic Alterations - histone modificationsDetection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression
http://hl7.org/fhir/genomicstudy-type5.0.0  fam-var-segrFamilial variant segregationDetermining if a variant identified in an individual is present in other family members
http://hl7.org/fhir/genomicstudy-type5.0.0  func-varFunctional variation detectionDetection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence
http://hl7.org/fhir/genomicstudy-type5.0.0  gene-expressionGene expression profilingMeasurement and characterization of activity from all gene products
http://hl7.org/fhir/genomicstudy-type5.0.0  post-trans-modPost-translational Modification IdentificationDetection of biochemical modifications covalently bound to the amino acid monomers of a processed protein
http://hl7.org/fhir/genomicstudy-type5.0.0  snpSNP DetectionDetermination of which nucleotide is base present at a known variable location of the genomic sequence
http://hl7.org/fhir/genomicstudy-type5.0.0  strSTR countQuantification of the number of sequential microsatellite units in a repetitive sequence region
http://hl7.org/fhir/genomicstudy-type5.0.0  struc-varStructural variation detectionDetection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code