Extensions for Using Data Elements from FHIR R5 in FHIR R4 - Downloaded Version null See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-type-for-R4 | Version: 0.1.0 | |||
| Standards status: Trial-use | Maturity Level: 1 | Responsible: Clinical Genomics | Computable Name: R5GenomicstudyTypeForR4 | |
This cross-version ValueSet represents content from http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0 for use in FHIR R4.
This value set is part of the cross-version definitions generated to enable use of the
value set http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0 as defined in FHIR R5
in FHIR R4.
The source value set is bound to the following FHIR R5 elements:
GenomicStudy.typeNote that all concepts are included in this cross-version definition because no concepts have compatible representations
Following are the generation technical comments:
FHIR ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-type|5.0.0, defined in FHIR R5 does not have any mapping to FHIR R4
References
http://hl7.org/fhir/genomicstudy-type version 📍5.0.0| Code | Display | Definition |
| alt-splc | Alternative splicing detection | Identification of multiple different processed mRNA transcripts from the same DNA template |
| chromatin | Chromatin conformation | Analysis of the spacial organization of chromatin within a cell |
| cnv | CNV detection | Detection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence |
| epi-alt-dna | Epigenetic Alterations -DNA methylation | Detection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription |
| epi-alt-hist | Epigenetic Alterations - histone modifications | Detection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression |
| fam-var-segr | Familial variant segregation | Determining if a variant identified in an individual is present in other family members |
| func-var | Functional variation detection | Detection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence |
| gene-expression | Gene expression profiling | Measurement and characterization of activity from all gene products |
| post-trans-mod | Post-translational Modification Identification | Detection of biochemical modifications covalently bound to the amino acid monomers of a processed protein |
| snp | SNP Detection | Determination of which nucleotide is base present at a known variable location of the genomic sequence |
| str | STR count | Quantification of the number of sequential microsatellite units in a repetitive sequence region |
| struc-var | Structural variation detection | Detection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence |
This value set expansion contains 12 concepts.
| System | Version | Code | Display | Definition | JSON | XML |
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | alt-splc | Alternative splicing detection | Identification of multiple different processed mRNA transcripts from the same DNA template | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | chromatin | Chromatin conformation | Analysis of the spacial organization of chromatin within a cell | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | cnv | CNV detection | Detection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | epi-alt-dna | Epigenetic Alterations -DNA methylation | Detection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | epi-alt-hist | Epigenetic Alterations - histone modifications | Detection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | fam-var-segr | Familial variant segregation | Determining if a variant identified in an individual is present in other family members | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | func-var | Functional variation detection | Detection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | gene-expression | Gene expression profiling | Measurement and characterization of activity from all gene products | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | post-trans-mod | Post-translational Modification Identification | Detection of biochemical modifications covalently bound to the amino acid monomers of a processed protein | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | snp | SNP Detection | Determination of which nucleotide is base present at a known variable location of the genomic sequence | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | str | STR count | Quantification of the number of sequential microsatellite units in a repetitive sequence region | ||
http://hl7.org/fhir/genomicstudy-type | 5.0.0 | struc-var | Structural variation detection | Detection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |