Extensions for Using Data Elements from FHIR R5 in FHIR R4
0.1.0 - STU International flag

Extensions for Using Data Elements from FHIR R5 in FHIR R4 - Downloaded Version null See the Directory of published versions

CodeSystem: GenomicStudyDataFormat (Experimental)

Official URL: http://hl7.org/fhir/genomicstudy-dataformat Version: 5.0.0
Standards status: Trial-use Maturity Level: 1 Responsible: Clinical Genomics Computable Name: GenomicStudyDataFormat

The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation by Broad Institute.

This Code system is referenced in the content logical definition of the following value sets:

This case-sensitive code system http://hl7.org/fhir/genomicstudy-dataformat defines the following codes:

CodeDisplay
bam BAM
bed BED
bedpe BEDPE
bedgraph BedGraph
bigbed bigBed
bigWig bigWig
birdsuite-files Birdsuite-Files
broadpeak broadPeak
cbs CBS
chemical-reactivity-probing-profiles Chemical-Reactivity-Probing-Profiles
chrom-sizes chrom-sizes
cn CN
custom-file-formats Custom-File-Formats
cytoband Cytoband
fasta FASTA
gct GCT
cram CRAM
genepred genePred
gff-gtf GFF/GTF
gistic GISTIC
goby Goby
gwas GWAS
igv IGV
loh LOH
maf-multiple-alignment-format MAF-Multiple Alignment Format
maf-mutation-annotation-format MAF-Mutation-Annotation-Format
merged-bam-file Merged BAM File
mut MUT
narrowpeak narrowPeak
psl PSL
res RES
rna-secondary-structure-formats RNA-Secondary-Structure-Formats
sam SAM
sample-info-attributes-file Sample-Info-Attributes-file
seg SEG
tdf TDF
track-line Track Line
type-line Type Line
vcf VCF
wig WIG