Extensions for Using Data Elements from FHIR R5 in FHIR STU3
0.1.0 - STU International flag

Extensions for Using Data Elements from FHIR R5 in FHIR STU3 - Downloaded Version null See the Directory of published versions

ValueSet: R5GenomicstudyDataformatForR3

Official URL: http://hl7.org/fhir/uv/xver/ValueSet/R5-genomicstudy-dataformat-for-R3 Version: 0.1.0
Standards status: Trial-use Maturity Level: 1 Responsible: Clinical Genomics Computable Name: R5GenomicstudyDataformatForR3

This cross-version ValueSet represents content from http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0 for use in FHIR STU3.

This value set is part of the cross-version definitions generated to enable use of the value set http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0 as defined in FHIR R5 in FHIR STU3.

The source value set is bound to the following FHIR R5 elements:

  • GenomicStudy.analysis.input.type
  • GenomicStudy.analysis.output.type

Note that all concepts are included in this cross-version definition because no concepts have compatible representations

Following are the generation technical comments:

FHIR ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0, defined in FHIR R5 does not have any mapping to FHIR STU3

References

Logical Definition (CLD)

 

Expansion

This value set expansion contains 40 concepts.

SystemVersionCodeDisplayJSONXML
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bamBAM
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bedBED
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bedgraphBedGraph
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bedpeBEDPE
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bigWigbigWig
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  bigbedbigBed
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  birdsuite-filesBirdsuite-Files
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  broadpeakbroadPeak
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  cbsCBS
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  chemical-reactivity-probing-profilesChemical-Reactivity-Probing-Profiles
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  chrom-sizeschrom-sizes
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  cnCN
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  cramCRAM
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  custom-file-formatsCustom-File-Formats
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  cytobandCytoband
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  fastaFASTA
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  gctGCT
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  genepredgenePred
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  gff-gtfGFF/GTF
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  gisticGISTIC
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  gobyGoby
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  gwasGWAS
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  igvIGV
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  lohLOH
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  maf-multiple-alignment-formatMAF-Multiple Alignment Format
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  maf-mutation-annotation-formatMAF-Mutation-Annotation-Format
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  merged-bam-fileMerged BAM File
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  mutMUT
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  narrowpeaknarrowPeak
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  pslPSL
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  resRES
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  rna-secondary-structure-formatsRNA-Secondary-Structure-Formats
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  samSAM
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  sample-info-attributes-fileSample-Info-Attributes-file
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  segSEG
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  tdfTDF
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  track-lineTrack Line
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  type-lineType Line
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  vcfVCF
http://hl7.org/fhir/genomicstudy-dataformat5.0.0  wigWIG

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code