Profile_R5_GenomicStudy_R3 - Definitions - Extensions for Using Data Elements from FHIR R5 in FHIR STU3 v0.1.0

Extensions for Using Data Elements from FHIR R5 in FHIR STU3 - Downloaded Version null See the Directory of published versions

Resource Profile: Profile_R5_GenomicStudy_R3 - Detailed Descriptions

Page standards status: Trial-use

Maturity Level: 0

Definitions for the profile-GenomicStudy resource profile.

Key Elements Table
Differential Elements Table
Snapshot Elements Table

Guidance on how to interpret the contents of this table can be foundhere

0. Basic
Definition	Basic is used for handling concepts not yet defined in FHIR, narrative-only resources that don't map to an existing resource, and custom resources not appropriate for inclusion in the FHIR specification.
Short	Resource for non-supported content
Control	0..*
Alternate Names	Z-resource, Extension-resource, Custom-resource
Invariants	dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources (`contained.contained.empty()`) dom-1: If the resource is contained in another resource, it SHALL NOT contain any narrative (`contained.text.empty()`) dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated (`contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()`) dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource (`contained.where(('#'+id in %resource.descendants().reference).not()).empty()`) dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources (contained.contained.empty()) dom-1: If the resource is contained in another resource, it SHALL NOT contain any narrative (contained.text.empty()) dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated (contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()) dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource (contained.where(('#'+id in %resource.descendants().reference).not()).empty())
2. Basic.implicitRules
Definition	A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content.
Short	A set of rules under which this content was created
Comments	Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. This element is labelled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies it's meaning or interpretation.
Control	0..1
Type	uri
Is Modifier	true because No Modifier Reason provideed in previous versions of FHIR
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
Summary	true
4. Basic.extension
Definition	An Extension May be used to represent additional information that is not part of the basic definition of the resource. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
Short	ExtensionAdditional Content defined by implementations
Comments	There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
Control	0..*
Type	Extension
Alternate Names	extensions, user content
Slicing	This element introduces a set of slices on `Basic.extension`. The slices areUnordered and Open, and can be differentiated using the following discriminators: value @ url
6. Basic.extension:type
Slice Name	type
Definition	R5: `GenomicStudy.type` (new:CodeableConcept)
Short	R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)
Comments	Element `GenomicStudy.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)) (Extension Type: CodeableConcept)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
8. Basic.extension:encounter
Slice Name	encounter
Definition	R5: `GenomicStudy.encounter` (new:Reference(Encounter))
Short	R5: The healthcare event with which this genomics study is associated (new)
Comments	Element `GenomicStudy.encounter` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.encounter` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: The healthcare event with which this genomics study is associated (new)) (Extension Type: Reference(Cross-version Profile for R5.Encounter for use in FHIR STU3, Encounter))
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
10. Basic.extension:startDate
Slice Name	startDate
Definition	R5: `GenomicStudy.startDate` (new:dateTime)
Short	R5: When the genomic study was started (new)
Comments	Element `GenomicStudy.startDate` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.startDate` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: When the genomic study was started (new)) (Extension Type: dateTime)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
12. Basic.extension:basedOn
Slice Name	basedOn
Definition	R5: `GenomicStudy.basedOn` (new:Reference(ServiceRequest,Task))
Short	R5: Event resources that the genomic study is based on (new)
Comments	Element `GenomicStudy.basedOn` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.basedOn` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: Event resources that the genomic study is based on (new)) (Extension Type: Reference(Cross-version Profile for R5.ServiceRequest for use in FHIR STU3, ReferralRequest, Cross-version Profile for R5.Task for use in FHIR STU3, Task))
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
14. Basic.extension:referrer
Slice Name	referrer
Definition	R5: `GenomicStudy.referrer` (new:Reference(Practitioner,PractitionerRole))
Short	R5: Healthcare professional who requested or referred the genomic study (new)
Comments	Element `GenomicStudy.referrer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.referrer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: Healthcare professional who requested or referred the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
16. Basic.extension:interpreter
Slice Name	interpreter
Definition	R5: `GenomicStudy.interpreter` (new:Reference(Practitioner,PractitionerRole))
Short	R5: Healthcare professionals who interpreted the genomic study (new)
Comments	Element `GenomicStudy.interpreter` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.interpreter` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: Healthcare professionals who interpreted the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
18. Basic.extension:reason
Slice Name	reason
Definition	R5: `GenomicStudy.reason` (new:CodeableReference(Condition,Observation))
Short	R5: Why the genomic study was performed (new)
Comments	Element `GenomicStudy.reason` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.reason` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: Why the genomic study was performed (new)) (Complex Extension)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
20. Basic.extension:instantiatesCanonical
Slice Name	instantiatesCanonical
Definition	R5: `GenomicStudy.instantiatesCanonical` (new:canonical(PlanDefinition))
Short	R5: The defined protocol that describes the study (new)
Comments	Element `GenomicStudy.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: The defined protocol that describes the study (new)) (Extension Type: uri(Cross-version Profile for R5.PlanDefinition for use in FHIR STU3, PlanDefinition))
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
22. Basic.extension:instantiatesUri
Slice Name	instantiatesUri
Definition	R5: `GenomicStudy.instantiatesUri` (new:uri)
Short	R5: The URL pointing to an externally maintained protocol that describes the study (new)
Comments	Element `GenomicStudy.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: The URL pointing to an externally maintained protocol that describes the study (new)) (Extension Type: uri)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
24. Basic.extension:note
Slice Name	note
Definition	R5: `GenomicStudy.note` (new:Annotation)
Short	R5: Comments related to the genomic study (new)
Comments	Element `GenomicStudy.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: Comments related to the genomic study (new)) (Extension Type: Annotation)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
26. Basic.extension:description
Slice Name	description
Definition	R5: `GenomicStudy.description` (new:markdown)
Short	R5: Description of the genomic study (new)
Comments	Element `GenomicStudy.description` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.description` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: Description of the genomic study (new)) (Extension Type: markdown)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
28. Basic.extension:analysis
Slice Name	analysis
Definition	R5: `GenomicStudy.analysis` (new:BackboneElement)
Short	R5: Genomic Analysis Event (new)
Comments	Element `GenomicStudy.analysis` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.analysis` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..* This element is affected by the following invariants: ele-1
Type	Extension(R5: Genomic Analysis Event (new)) (Complex Extension)
Is Modifier	false
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
30. Basic.modifierExtension
Definition	An Extension May be used to represent additional information that is not part of the basic definition of the resource, and that modifies the understanding of the element that contains it. Usually modifier elements provide negation or qualification. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.
Short	ExtensionExtensions that cannot be ignored
Comments	There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
Control	0..*
Type	Extension
Is Modifier	true because No Modifier Reason provideed in previous versions of FHIR
Alternate Names	extensions, user content
Slicing	This element introduces a set of slices on `Basic.modifierExtension`. The slices areUnordered and Open, and can be differentiated using the following discriminators: value @ url
32. Basic.modifierExtension:status
Slice Name	status
Definition	R5: `GenomicStudy.status` (new:code)
Short	R5: registered \| available \| cancelled \| entered-in-error \| unknown (new)
Comments	Element `GenomicStudy.status` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.status` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	1..1 This element is affected by the following invariants: ele-1
Type	Extension(R5: registered \| available \| cancelled \| entered-in-error \| unknown (new)) (Extension Type: code)
Is Modifier	true because No Modifier Reason provideed in previous versions of FHIR
Invariants	ele-1: All FHIR elements must have a @value or children (`hasValue() \| (children().count() > id.count())`) ext-1: Must have either extensions or value[x], not both (`extension.exists() != value.exists()`)
34. Basic.code
Definition	Identifies the 'type' of resource - equivalent to the resource name for other resources.
Short	Kind of Resource
Comments	Because resource references will only be able to indicate 'Basic', the type of reference will need to be specified in a Profile identified as part of the resource. Refer to the resource notes section for information on appropriate terminologies for this code. This element is labeled as a modifier because the it defines the meaning of the resource and cannot be ignored.
Control	1..1
Binding	For example codes, see Basic Resource Typeshttp://hl7.org/fhir/ValueSet/basic-resource-type\|3.0.2 (example to `http://hl7.org/fhir/ValueSet/basic-resource-type\|3.0.2`) Codes for identifying types of resources not yet defined by FHIR
Type	CodeableConcept
Is Modifier	true because No Modifier Reason provideed in previous versions of FHIR
Summary	true
Requirements	Must be able to distinguish different types of Basic resources.

Guidance on how to interpret the contents of this table can be foundhere

0. Basic
2. Basic.extension
Control	0..*
Slicing	This element introduces a set of slices on `Basic.extension`. The slices areUnordered and Open, and can be differentiated using the following discriminators: value @ url
4. Basic.extension:type
Slice Name	type
Definition	R5: `GenomicStudy.type` (new:CodeableConcept)
Short	R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)
Comments	Element `GenomicStudy.type` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.type` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)) (Extension Type: CodeableConcept)
6. Basic.extension:encounter
Slice Name	encounter
Definition	R5: `GenomicStudy.encounter` (new:Reference(Encounter))
Short	R5: The healthcare event with which this genomics study is associated (new)
Comments	Element `GenomicStudy.encounter` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.encounter` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: The healthcare event with which this genomics study is associated (new)) (Extension Type: Reference(Cross-version Profile for R5.Encounter for use in FHIR STU3, Encounter))
8. Basic.extension:startDate
Slice Name	startDate
Definition	R5: `GenomicStudy.startDate` (new:dateTime)
Short	R5: When the genomic study was started (new)
Comments	Element `GenomicStudy.startDate` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.startDate` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: When the genomic study was started (new)) (Extension Type: dateTime)
10. Basic.extension:basedOn
Slice Name	basedOn
Definition	R5: `GenomicStudy.basedOn` (new:Reference(ServiceRequest,Task))
Short	R5: Event resources that the genomic study is based on (new)
Comments	Element `GenomicStudy.basedOn` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.basedOn` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: Event resources that the genomic study is based on (new)) (Extension Type: Reference(Cross-version Profile for R5.ServiceRequest for use in FHIR STU3, ReferralRequest, Cross-version Profile for R5.Task for use in FHIR STU3, Task))
12. Basic.extension:referrer
Slice Name	referrer
Definition	R5: `GenomicStudy.referrer` (new:Reference(Practitioner,PractitionerRole))
Short	R5: Healthcare professional who requested or referred the genomic study (new)
Comments	Element `GenomicStudy.referrer` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.referrer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: Healthcare professional who requested or referred the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))
14. Basic.extension:interpreter
Slice Name	interpreter
Definition	R5: `GenomicStudy.interpreter` (new:Reference(Practitioner,PractitionerRole))
Short	R5: Healthcare professionals who interpreted the genomic study (new)
Comments	Element `GenomicStudy.interpreter` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.interpreter` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: Healthcare professionals who interpreted the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))
16. Basic.extension:reason
Slice Name	reason
Definition	R5: `GenomicStudy.reason` (new:CodeableReference(Condition,Observation))
Short	R5: Why the genomic study was performed (new)
Comments	Element `GenomicStudy.reason` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.reason` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: Why the genomic study was performed (new)) (Complex Extension)
18. Basic.extension:instantiatesCanonical
Slice Name	instantiatesCanonical
Definition	R5: `GenomicStudy.instantiatesCanonical` (new:canonical(PlanDefinition))
Short	R5: The defined protocol that describes the study (new)
Comments	Element `GenomicStudy.instantiatesCanonical` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.instantiatesCanonical` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: The defined protocol that describes the study (new)) (Extension Type: uri(Cross-version Profile for R5.PlanDefinition for use in FHIR STU3, PlanDefinition))
20. Basic.extension:instantiatesUri
Slice Name	instantiatesUri
Definition	R5: `GenomicStudy.instantiatesUri` (new:uri)
Short	R5: The URL pointing to an externally maintained protocol that describes the study (new)
Comments	Element `GenomicStudy.instantiatesUri` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.instantiatesUri` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: The URL pointing to an externally maintained protocol that describes the study (new)) (Extension Type: uri)
22. Basic.extension:note
Slice Name	note
Definition	R5: `GenomicStudy.note` (new:Annotation)
Short	R5: Comments related to the genomic study (new)
Comments	Element `GenomicStudy.note` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.note` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: Comments related to the genomic study (new)) (Extension Type: Annotation)
24. Basic.extension:description
Slice Name	description
Definition	R5: `GenomicStudy.description` (new:markdown)
Short	R5: Description of the genomic study (new)
Comments	Element `GenomicStudy.description` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.description` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..1
Type	Extension(R5: Description of the genomic study (new)) (Extension Type: markdown)
26. Basic.extension:analysis
Slice Name	analysis
Definition	R5: `GenomicStudy.analysis` (new:BackboneElement)
Short	R5: Genomic Analysis Event (new)
Comments	Element `GenomicStudy.analysis` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.analysis` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	0..*
Type	Extension(R5: Genomic Analysis Event (new)) (Complex Extension)
28. Basic.modifierExtension
Control	0..*
Slicing	This element introduces a set of slices on `Basic.modifierExtension`. The slices areUnordered and Open, and can be differentiated using the following discriminators: value @ url
30. Basic.modifierExtension:status
Slice Name	status
Definition	R5: `GenomicStudy.status` (new:code)
Short	R5: registered \| available \| cancelled \| entered-in-error \| unknown (new)
Comments	Element `GenomicStudy.status` is not mapped to FHIR STU3, since FHIR R5 `GenomicStudy` is not mapped. Element `GenomicStudy.status` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Control	1..1
Type	Extension(R5: registered \| available \| cancelled \| entered-in-error \| unknown (new)) (Extension Type: code)

Guidance on how to interpret the contents of this table can be foundhere

0. Basic

Definition

Basic is used for handling concepts not yet defined in FHIR, narrative-only resources that don't map to an existing resource, and custom resources not appropriate for inclusion in the FHIR specification.

Short Resource for non-supported content

Control 0..*

Alternate Names Z-resource, Extension-resource, Custom-resource

Invariants dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources (contained.contained.empty())
dom-1: If the resource is contained in another resource, it SHALL NOT contain any narrative (contained.text.empty())
dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated (contained.meta.versionId.empty() and contained.meta.lastUpdated.empty())
dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource (contained.where(('#'+id in %resource.descendants().reference).not()).empty())

2. Basic.id

Definition

The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes.

Short Logical id of this artifact

Comments

The only time that a resource does not have an id is when it is being submitted to the server using a create operation.

Control 0..1

Type

Primitive Value This primitive element may be present, or absent, or replaced by an extension

Summary true

4. Basic.meta

Definition

The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content may not always be associated with version changes to the resource.

Short Metadata about the resource

Control 0..1

Type

Meta

Summary true

6. Basic.implicitRules

Definition

A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content.

Short A set of rules under which this content was created

Comments

Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element.

This element is labelled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies it's meaning or interpretation.

Control 0..1

Type

uri

Is Modifier true because No Modifier Reason provideed in previous versions of FHIR

Primitive Value This primitive element may be present, or absent, or replaced by an extension

Summary true

8. Basic.language

Definition

The base language in which the resource is written.

Short Language of the resource content

Comments

Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute).

Control 0..1

Binding

Unless not suitable, these codes SHALL be taken from Common Languages

(extensible to http://hl7.org/fhir/ValueSet/languages|3.0.2)

A human language.

Additional Bindings

Purpose

Primitive Value This primitive element may be present, or absent, or replaced by an extension

10. Basic.text

Definition

A human-readable narrative that contains a summary of the resource, and may be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety.

Short Text summary of the resource, for human interpretation

Comments

Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded in formation is added later.

Control 0..1
This element is affected by the following invariants: dom-1

Type

Narrative

Alternate Names narrative, html, xhtml, display

12. Basic.contained

Definition

These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, and nor can they have their own independent transaction scope.

Short Contained, inline Resources

Comments

This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again.

Control 0..*

Type

Resource

Alternate Names inline resources, anonymous resources, contained resources

14. Basic.extension

Definition

An Extension

Short Extension

Control 0..*

Type

Extension

Slicing

This element introduces a set of slices on Basic.extension. The slices areUnordered and Open, and can be differentiated using the following discriminators:

value @ url

16. Basic.extension:type

Slice Name type

Definition

R5: GenomicStudy.type (new:CodeableConcept)

Short R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)

Comments

Element GenomicStudy.type is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.type has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: The type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling) (new)) (Extension Type: CodeableConcept)

Is Modifier false

Invariants ele-1: All FHIR elements must have a @value or children (hasValue() | (children().count() > id.count()))
ext-1: Must have either extensions or value[x], not both (extension.exists() != value.exists())

18. Basic.extension:encounter

Slice Name encounter

Definition

R5: GenomicStudy.encounter (new:Reference(Encounter))

Short R5: The healthcare event with which this genomics study is associated (new)

Comments

Element GenomicStudy.encounter is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.encounter has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: The healthcare event with which this genomics study is associated (new)) (Extension Type: Reference(Cross-version Profile for R5.Encounter for use in FHIR STU3, Encounter))

Is Modifier false

20. Basic.extension:startDate

Slice Name startDate

Definition

R5: GenomicStudy.startDate (new:dateTime)

Short R5: When the genomic study was started (new)

Comments

Element GenomicStudy.startDate is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.startDate has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: When the genomic study was started (new)) (Extension Type: dateTime)

Is Modifier false

22. Basic.extension:basedOn

Slice Name basedOn

Definition

R5: GenomicStudy.basedOn (new:Reference(ServiceRequest,Task))

Short R5: Event resources that the genomic study is based on (new)

Comments

Element GenomicStudy.basedOn is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.basedOn has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: Event resources that the genomic study is based on (new)) (Extension Type: Reference(Cross-version Profile for R5.ServiceRequest for use in FHIR STU3, ReferralRequest, Cross-version Profile for R5.Task for use in FHIR STU3, Task))

Is Modifier false

24. Basic.extension:referrer

Slice Name referrer

Definition

R5: GenomicStudy.referrer (new:Reference(Practitioner,PractitionerRole))

Short R5: Healthcare professional who requested or referred the genomic study (new)

Comments

Element GenomicStudy.referrer is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.referrer has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: Healthcare professional who requested or referred the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))

Is Modifier false

26. Basic.extension:interpreter

Slice Name interpreter

Definition

R5: GenomicStudy.interpreter (new:Reference(Practitioner,PractitionerRole))

Short R5: Healthcare professionals who interpreted the genomic study (new)

Comments

Element GenomicStudy.interpreter is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.interpreter has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: Healthcare professionals who interpreted the genomic study (new)) (Extension Type: Reference(Cross-version Profile for R5.Practitioner for use in FHIR STU3, Practitioner, Cross-version Profile for R5.PractitionerRole for use in FHIR STU3, PractitionerRole))

Is Modifier false

28. Basic.extension:reason

Slice Name reason

Definition

R5: GenomicStudy.reason (new:CodeableReference(Condition,Observation))

Short R5: Why the genomic study was performed (new)

Comments

Element GenomicStudy.reason is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.reason has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: Why the genomic study was performed (new)) (Complex Extension)

Is Modifier false

30. Basic.extension:instantiatesCanonical

Slice Name instantiatesCanonical

Definition

R5: GenomicStudy.instantiatesCanonical (new:canonical(PlanDefinition))

Short R5: The defined protocol that describes the study (new)

Comments

Element GenomicStudy.instantiatesCanonical is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.instantiatesCanonical has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: The defined protocol that describes the study (new)) (Extension Type: uri(Cross-version Profile for R5.PlanDefinition for use in FHIR STU3, PlanDefinition))

Is Modifier false

32. Basic.extension:instantiatesUri

Slice Name instantiatesUri

Definition

R5: GenomicStudy.instantiatesUri (new:uri)

Short R5: The URL pointing to an externally maintained protocol that describes the study (new)

Comments

Element GenomicStudy.instantiatesUri is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.instantiatesUri has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: The URL pointing to an externally maintained protocol that describes the study (new)) (Extension Type: uri)

Is Modifier false

34. Basic.extension:note

Slice Name note

Definition

R5: GenomicStudy.note (new:Annotation)

Short R5: Comments related to the genomic study (new)

Comments

Element GenomicStudy.note is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.note has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: Comments related to the genomic study (new)) (Extension Type: Annotation)

Is Modifier false

36. Basic.extension:description

Slice Name description

Definition

R5: GenomicStudy.description (new:markdown)

Short R5: Description of the genomic study (new)

Comments

Element GenomicStudy.description is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.description has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..1
This element is affected by the following invariants: ele-1

Type Extension(R5: Description of the genomic study (new)) (Extension Type: markdown)

Is Modifier false

38. Basic.extension:analysis

Slice Name analysis

Definition

R5: GenomicStudy.analysis (new:BackboneElement)

Short R5: Genomic Analysis Event (new)

Comments

Element GenomicStudy.analysis is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.analysis has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 0..*
This element is affected by the following invariants: ele-1

Type Extension(R5: Genomic Analysis Event (new)) (Complex Extension)

Is Modifier false

40. Basic.modifierExtension

Definition

An Extension

Short Extension

Control 0..*

Type

Extension

Is Modifier true because No Modifier Reason provideed in previous versions of FHIR

Slicing

This element introduces a set of slices on Basic.modifierExtension. The slices areUnordered and Open, and can be differentiated using the following discriminators:

value @ url

42. Basic.modifierExtension:status

Slice Name status

Definition

R5: GenomicStudy.status (new:code)

Short R5: registered | available | cancelled | entered-in-error | unknown (new)

Comments

Element GenomicStudy.status is not mapped to FHIR STU3, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.status has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).

Control 1..1
This element is affected by the following invariants: ele-1

Type Extension(R5: registered | available | cancelled | entered-in-error | unknown (new)) (Extension Type: code)

Is Modifier true because No Modifier Reason provideed in previous versions of FHIR

44. Basic.identifier

Definition

Identifier assigned to the resource for business purposes, outside the context of FHIR.

Short Business identifier

Note This is a business identifier, not a resource identifier (see discussion)

Control 0..*

Type

Identifier

Summary true

46. Basic.code

Definition

Identifies the 'type' of resource - equivalent to the resource name for other resources.

Short Kind of Resource

Comments

Because resource references will only be able to indicate 'Basic', the type of reference will need to be specified in a Profile identified as part of the resource. Refer to the resource notes section for information on appropriate terminologies for this code.

This element is labeled as a modifier because the it defines the meaning of the resource and cannot be ignored.

Control 1..1

Binding

For example codes, see Basic Resource Types
(example to http://hl7.org/fhir/ValueSet/basic-resource-type|3.0.2)

Codes for identifying types of resources not yet defined by FHIR

Type

CodeableConcept

Is Modifier true because No Modifier Reason provideed in previous versions of FHIR

Summary true

Requirements

Must be able to distinguish different types of Basic resources.

48. Basic.subject

Definition

Identifies the patient, practitioner, device or any other resource that is the "focus" of this resource.

Short Identifies the focus of this resource

Comments

Optional as not all potential resources will have subjects. Resources associated with multiple subjects can handle this via extension.

Control 0..1

Type Reference(Resource)

Summary true

Requirements

Needed for partitioning the resource by Patient.

50. Basic.created

Definition

Identifies when the resource was first created.

Short When created

Control 0..1

Type

date

Primitive Value This primitive element may be present, or absent, or replaced by an extension

Summary true

Requirements

Allows ordering resource instances by time.

52. Basic.author

Definition

Indicates who was responsible for creating the resource instance.

Short Who created

Control 0..1

Type Reference(Practitioner, Patient, RelatedPerson)

Summary true

Requirements

Needed for partitioning the resource.