FHIR Cross-Version Extensions package for FHIR R5 from FHIR R4B
0.0.1-snapshot-2 - informative International flag

FHIR Cross-Version Extensions package for FHIR R5 from FHIR R4B - Version 0.0.1-snapshot-2. See the Directory of published versions

Extension: Cross-version Extension for R4B.MolecularSequence.variant for use in FHIR R5

Official URL: http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.variant Version: 0.0.1-snapshot-2
Standards status: Informative Maturity Level: 0 Computable Name: Ext_R4B_MolecularSequence_variant
This cross-version extension represents MolecularSequence.variant from http://hl7.org/fhir/StructureDefinition/MolecularSequence 4.3.0 for use in FHIR R5.

Context of Use

This extension may be used on the following element(s):

  • Element ID MolecularSequence

Usage info

Usages:

  • This Extension is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

Summary

Simple Extension with the type base64Binary, boolean, canonical, code, date, dateTime, decimal, id, instant, integer, integer64, markdown, oid, positiveInt, string, time, unsignedInt, uri, url, uuid, Address, Age, Annotation, Attachment, CodeableConcept, CodeableReference, Coding, ContactPoint, Count, Distance, Duration, HumanName, Identifier, Money, Period, Quantity, Range, Ratio, RatioRange, Reference, SampledData, Signature, Timing, ContactDetail, DataRequirement, Expression, ParameterDefinition, RelatedArtifact, TriggerDefinition, UsageContext, Availability, ExtendedContactDetail, Dosage, Meta: This cross-version extension represents MolecularSequence.variant from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.3.0 for use in FHIR R5.

Maturity: 0

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(5.0.0) Variant in sequence
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
.... extension:start 0..1 Extension Start position of the variant on the reference sequence
..... url 1..1 uri "start"
..... value[x] 0..1 integer Start position of the variant on the reference sequence
.... extension:end 0..1 Extension End position of the variant on the reference sequence
..... url 1..1 uri "end"
..... value[x] 0..1 integer End position of the variant on the reference sequence
.... extension:observedAllele 0..1 Extension Allele that was observed
..... url 1..1 uri "observedAllele"
..... value[x] 0..1 string Allele that was observed
.... extension:referenceAllele 0..1 Extension Allele in the reference sequence
..... url 1..1 uri "referenceAllele"
..... value[x] 0..1 string Allele in the reference sequence
.... extension:cigar 0..1 Extension Extended CIGAR string for aligning the sequence with reference bases
..... url 1..1 uri "cigar"
..... value[x] 0..1 string Extended CIGAR string for aligning the sequence with reference bases
.... extension:variantPointer 0..1 Extension Pointer to observed variant information
..... url 1..1 uri "variantPointer"
..... value[x] 0..1 Reference() Pointer to observed variant information
... url 1..1 uri "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.variant"

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(5.0.0) Variant in sequence
Constraints: ext-1
... id 0..1 id Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
Constraints: ext-1
.... extension:start 0..1 Extension Start position of the variant on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "start"
..... value[x] 0..1 integer Start position of the variant on the reference sequence
.... extension:end 0..1 Extension End position of the variant on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "end"
..... value[x] 0..1 integer End position of the variant on the reference sequence
.... extension:observedAllele 0..1 Extension Allele that was observed
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "observedAllele"
..... value[x] 0..1 string Allele that was observed
.... extension:referenceAllele 0..1 Extension Allele in the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceAllele"
..... value[x] 0..1 string Allele in the reference sequence
.... extension:cigar 0..1 Extension Extended CIGAR string for aligning the sequence with reference bases
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "cigar"
..... value[x] 0..1 string Extended CIGAR string for aligning the sequence with reference bases
.... extension:variantPointer 0..1 Extension Pointer to observed variant information
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "variantPointer"
..... value[x] 0..1 Reference() Pointer to observed variant information
... url 1..1 uri "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.variant"
.... valueBase64Binary base64Binary
.... valueBoolean boolean
.... valueCanonical canonical(Any)
.... valueCode code
.... valueDate date
.... valueDateTime dateTime
.... valueDecimal decimal
.... valueId id
.... valueInstant instant
.... valueInteger integer
.... valueInteger64 integer64
.... valueMarkdown markdown
.... valueOid oid
.... valuePositiveInt positiveInt
.... valueString string
.... valueTime time
.... valueUnsignedInt unsignedInt
.... valueUri uri
.... valueUrl url
.... valueUuid uuid
.... valueAddress Address
.... valueAge Age
.... valueAnnotation Annotation
.... valueAttachment Attachment
.... valueCodeableConcept CodeableConcept
.... valueCodeableReference CodeableReference
.... valueCoding Coding
.... valueContactPoint ContactPoint
.... valueCount Count
.... valueDistance Distance
.... valueDuration Duration
.... valueHumanName HumanName
.... valueIdentifier Identifier
.... valueMoney Money
.... valuePeriod Period
.... valueQuantity Quantity
.... valueRange Range
.... valueRatio Ratio
.... valueRatioRange RatioRange
.... valueReference Reference(Any)
.... valueSampledData SampledData
.... valueSignature Signature
.... valueTiming Timing
.... valueContactDetail ContactDetail
.... valueDataRequirement DataRequirement
.... valueExpression Expression
.... valueParameterDefinition ParameterDefinition
.... valueRelatedArtifact RelatedArtifact
.... valueTriggerDefinition TriggerDefinition
.... valueUsageContext UsageContext
.... valueAvailability Availability
.... valueExtendedContactDetail ExtendedContactDetail
.... valueDosage Dosage
.... valueMeta Meta

doco Documentation for this format

This structure is derived from Extension

Summary

Simple Extension with the type base64Binary, boolean, canonical, code, date, dateTime, decimal, id, instant, integer, integer64, markdown, oid, positiveInt, string, time, unsignedInt, uri, url, uuid, Address, Age, Annotation, Attachment, CodeableConcept, CodeableReference, Coding, ContactPoint, Count, Distance, Duration, HumanName, Identifier, Money, Period, Quantity, Range, Ratio, RatioRange, Reference, SampledData, Signature, Timing, ContactDetail, DataRequirement, Expression, ParameterDefinition, RelatedArtifact, TriggerDefinition, UsageContext, Availability, ExtendedContactDetail, Dosage, Meta: This cross-version extension represents MolecularSequence.variant from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.3.0 for use in FHIR R5.

Maturity: 0

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(5.0.0) Variant in sequence
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
.... extension:start 0..1 Extension Start position of the variant on the reference sequence
..... url 1..1 uri "start"
..... value[x] 0..1 integer Start position of the variant on the reference sequence
.... extension:end 0..1 Extension End position of the variant on the reference sequence
..... url 1..1 uri "end"
..... value[x] 0..1 integer End position of the variant on the reference sequence
.... extension:observedAllele 0..1 Extension Allele that was observed
..... url 1..1 uri "observedAllele"
..... value[x] 0..1 string Allele that was observed
.... extension:referenceAllele 0..1 Extension Allele in the reference sequence
..... url 1..1 uri "referenceAllele"
..... value[x] 0..1 string Allele in the reference sequence
.... extension:cigar 0..1 Extension Extended CIGAR string for aligning the sequence with reference bases
..... url 1..1 uri "cigar"
..... value[x] 0..1 string Extended CIGAR string for aligning the sequence with reference bases
.... extension:variantPointer 0..1 Extension Pointer to observed variant information
..... url 1..1 uri "variantPointer"
..... value[x] 0..1 Reference() Pointer to observed variant information
... url 1..1 uri "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.variant"

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(5.0.0) Variant in sequence
Constraints: ext-1
... id 0..1 id Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
Constraints: ext-1
.... extension:start 0..1 Extension Start position of the variant on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "start"
..... value[x] 0..1 integer Start position of the variant on the reference sequence
.... extension:end 0..1 Extension End position of the variant on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "end"
..... value[x] 0..1 integer End position of the variant on the reference sequence
.... extension:observedAllele 0..1 Extension Allele that was observed
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "observedAllele"
..... value[x] 0..1 string Allele that was observed
.... extension:referenceAllele 0..1 Extension Allele in the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceAllele"
..... value[x] 0..1 string Allele in the reference sequence
.... extension:cigar 0..1 Extension Extended CIGAR string for aligning the sequence with reference bases
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "cigar"
..... value[x] 0..1 string Extended CIGAR string for aligning the sequence with reference bases
.... extension:variantPointer 0..1 Extension Pointer to observed variant information
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "variantPointer"
..... value[x] 0..1 Reference() Pointer to observed variant information
... url 1..1 uri "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.variant"
.... valueBase64Binary base64Binary
.... valueBoolean boolean
.... valueCanonical canonical(Any)
.... valueCode code
.... valueDate date
.... valueDateTime dateTime
.... valueDecimal decimal
.... valueId id
.... valueInstant instant
.... valueInteger integer
.... valueInteger64 integer64
.... valueMarkdown markdown
.... valueOid oid
.... valuePositiveInt positiveInt
.... valueString string
.... valueTime time
.... valueUnsignedInt unsignedInt
.... valueUri uri
.... valueUrl url
.... valueUuid uuid
.... valueAddress Address
.... valueAge Age
.... valueAnnotation Annotation
.... valueAttachment Attachment
.... valueCodeableConcept CodeableConcept
.... valueCodeableReference CodeableReference
.... valueCoding Coding
.... valueContactPoint ContactPoint
.... valueCount Count
.... valueDistance Distance
.... valueDuration Duration
.... valueHumanName HumanName
.... valueIdentifier Identifier
.... valueMoney Money
.... valuePeriod Period
.... valueQuantity Quantity
.... valueRange Range
.... valueRatio Ratio
.... valueRatioRange RatioRange
.... valueReference Reference(Any)
.... valueSampledData SampledData
.... valueSignature Signature
.... valueTiming Timing
.... valueContactDetail ContactDetail
.... valueDataRequirement DataRequirement
.... valueExpression Expression
.... valueParameterDefinition ParameterDefinition
.... valueRelatedArtifact RelatedArtifact
.... valueTriggerDefinition TriggerDefinition
.... valueUsageContext UsageContext
.... valueAvailability Availability
.... valueExtendedContactDetail ExtendedContactDetail
.... valueDosage Dosage
.... valueMeta Meta

doco Documentation for this format

 

Other representations of profile: CSV, Excel, Schematron

Constraints

IdGradePath(s)DetailsRequirements
ele-1errorExtension, Extension.extension, Extension.extension:start, Extension.extension:start.extension, Extension.extension:start.value[x], Extension.extension:end, Extension.extension:end.extension, Extension.extension:end.value[x], Extension.extension:observedAllele, Extension.extension:observedAllele.extension, Extension.extension:observedAllele.value[x], Extension.extension:referenceAllele, Extension.extension:referenceAllele.extension, Extension.extension:referenceAllele.value[x], Extension.extension:cigar, Extension.extension:cigar.extension, Extension.extension:cigar.value[x], Extension.extension:variantPointer, Extension.extension:variantPointer.extension, Extension.extension:variantPointer.value[x], Extension.value[x]All FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1errorExtension, Extension.extension, Extension.extension:start, Extension.extension:start.extension, Extension.extension:end, Extension.extension:end.extension, Extension.extension:observedAllele, Extension.extension:observedAllele.extension, Extension.extension:referenceAllele, Extension.extension:referenceAllele.extension, Extension.extension:cigar, Extension.extension:cigar.extension, Extension.extension:variantPointer, Extension.extension:variantPointer.extensionMust have either extensions or value[x], not both
: extension.exists() != value.exists()