Generated Narrative: StructureDefinition ext-R4B-MolecularSequence.referenceSeq Name Flags Card. Type Description & Constraints Extension 0..1 Extension(5.0.0) A sequence used as reference #xD; Slices for extension 0..* Extension Extension Slice: Unordered, Closed by value:url #xD; extension:chromosome 0..1 Extension Chromosome containing genetic finding #xD; url 1..1 uri "chromosome" #xD; value[x] 0..1 CodeableConcept Chromosome containing genetic finding Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): The chromosome containing the genetic finding #xD; extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' #xD; url 1..1 uri "genomeBuild" #xD; value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' #xD; extension:orientation 0..1 Extension sense | antisense #xD; url 1..1 uri "orientation" #xD; value[x] 0..1 code sense | antisense Binding: OrientationType (required): Type for orientation #xD; <a href="StructureDefinition-ext-R4B-MolecularSequence.referenceSeq-definitions.html#Extension.extension:referenceSeqId" title="Slice referenceSeqId: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.">extension:referenceSeqId 0..1 Extension Reference identifier #xD; url 1..1 uri "referenceSeqId" #xD; <a href="StructureDefinition-ext-R4B-MolecularSequence.referenceSeq-definitions.html#Extension.extension:referenceSeqId.value[x]" title="Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.">value[x] 0..1 CodeableConcept Reference identifier Binding: R4B_sequence_referenceSeq_for_R5 (0.0.1-snapshot-2) (example): Reference identifier for reference sequence #xD; extension:referenceSeqPointer 0..1 Extension A pointer to another MolecularSequence entity as reference sequence #xD; url 1..1 uri "referenceSeqPointer" #xD; value[x] 0..1 Reference() A pointer to another MolecularSequence entity as reference sequence #xD; extension:referenceSeqString 0..1 Extension A string to represent reference sequence #xD; url 1..1 uri "referenceSeqString" #xD; value[x] 0..1 string A string to represent reference sequence #xD; extension:strand 0..1 Extension watson | crick #xD; url 1..1 uri "strand" #xD; value[x] 0..1 code watson | crick Binding: StrandType (required): Type for strand #xD; extension:windowStart 0..1 Extension Start position of the window on the reference sequence #xD; url 1..1 uri "windowStart" #xD; value[x] 0..1 integer Start position of the window on the reference sequence #xD; extension:windowEnd 0..1 Extension End position of the window on the reference sequence #xD; url 1..1 uri "windowEnd" #xD; value[x] 0..1 integer End position of the window on the reference sequence #xD; url 1..1 uri "http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.referenceSeq" #xD; Documentation for this format
Cross-version Extension for R4B.MolecularSequence.referenceSeq for use in FHIR R5
This cross-version extension represents MolecularSequence.referenceSeq from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.3.0 for use in FHIR R5.
A sequence that is used as a reference to describe variants that are present in a sequence analyzed.
`MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
All FHIR elements must have a @value or children
hasValue() or (children().count() > id.count())
Must have either extensions or value[x], not both
Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
Extensions are always sliced by (at least) url
Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
Additional content defined by implementations
May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
Source of the definition for the extension code - a logical name or a URL.
The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
The chromosome containing the genetic finding
The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
Reference identifier for reference sequence
A pointer to another MolecularSequence entity as reference sequence
A string to represent reference sequence
An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
Start position of the window on the reference sequence
Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
End position of the window on the reference sequence
End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R5/extensibility.html) for a list).