ext-R4B-MolecularSequence.referenceSeq
type: StructureDefinition
node role: treeRoot
id:
  v: ext-R4B-MolecularSequence.referenceSeq
text:
  status:
    v: extensions
  div: Generated Narrative: StructureDefinition ext-R4B-MolecularSequence.referenceSeq Name Flags Card. Type Description & Constraints<img src="[binary]" alt="doco" style="background-color: inherit"/> Extension 0..1 Extension(5.0.0) A sequence used as reference #xD; Slices for extension 0..* Extension Extension Slice: Unordered, Closed by value:url #xD; extension:chromosome 0..1 Extension Chromosome containing genetic finding #xD; url 1..1 uri "chromosome" #xD; value[x] 0..1 CodeableConcept Chromosome containing genetic finding Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): The chromosome containing the genetic finding #xD; extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' #xD; url 1..1 uri "genomeBuild" #xD; value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37' #xD; extension:orientation 0..1 Extension sense | antisense #xD; url 1..1 uri "orientation" #xD; value[x] 0..1 code sense | antisense Binding: OrientationType (required): Type for orientation #xD; <a href="StructureDefinition-ext-R4B-MolecularSequence.referenceSeq-definitions.html#Extension.extension:referenceSeqId" title="Slice referenceSeqId: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.">extension:referenceSeqId 0..1 Extension Reference identifier #xD; url 1..1 uri "referenceSeqId" #xD; <a href="StructureDefinition-ext-R4B-MolecularSequence.referenceSeq-definitions.html#Extension.extension:referenceSeqId.value[x]" title="Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, …
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/structuredefinition-wg
  value: code
    v: fhir
extension:
  extension:
    url:
      v: packageId
    value: id
      v: hl7.fhir.uv.xver-r4b.r5
  extension:
    url:
      v: version
    value: string
      v: 0.0.1-snapshot-2
  url:
    v: http://hl7.org/fhir/StructureDefinition/package-source
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/structuredefinition-type-characteristics
  value: code
    v: can-bind
extension:
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  value: integer
    v: 0
    extension:
      url:
        v: http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom
      value: canonical
        v: http://hl7.org/fhir/4.3/ImplementationGuide/hl7.fhir.uv.xver-r4b.r5
        link: http://hl7.org/fhir/4.3/ImplementationGuide/hl7.fhir.uv.xver-r4b.r5
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status
  value: code
    v: trial-use
    extension:
      url:
        v: http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom
      value: canonical
        v: http://hl7.org/fhir/4.3/ImplementationGuide/hl7.fhir.uv.xver-r4b.r5
        link: http://hl7.org/fhir/4.3/ImplementationGuide/hl7.fhir.uv.xver-r4b.r5
url:
  v: http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.referenceSeq
version:
  v: 0.0.1-snapshot-2
name:
  v: Ext_R4B_MolecularSequence_referenceSeq
title:
  v: Cross-version Extension for R4B.MolecularSequence.referenceSeq for use in FHIR R5
status:
  v: active
experimental:
  v: false
date:
  v: 2025-09-01T22:36:53.361952+10:00
publisher:
  v: FHIR Infrastructure
contact:
  name:
    v: FHIR Infrastructure
  telecom:
    system:
      v: url
    value:
      v: http://www.hl7.org/Special/committees/fiwg
description:
  v: This cross-version extension represents MolecularSequence.referenceSeq from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.3.0 for use in FHIR R5.
jurisdiction:
  coding:
    system:
      v: http://unstats.un.org/unsd/methods/m49/m49.htm
    code:
      v: 001
    display:
      v: World
fhir version:
  v: 5.0.0
mapping:
  identity:
    v: rim
  uri:
    v: http://hl7.org/v3
  name:
    v: RIM Mapping
kind:
  v: complex-type
abstract:
  v: false
context:
  type:
    v: element
  expression:
    v: MolecularSequence
type:
  v: Extension
base definition:
  v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
  link: 5.0
  link: .0
derivation:
  v: constraint
snapshot:
  extension:
    url:
      v: http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version
    value: string
      v: 5.0.0
  element:
    id:
      v: Extension
    path:
      v: Extension
    short:
      v: A sequence used as reference
    definition:
      v: A sequence that is used as a reference to describe variants that are present in a sequence analyzed.
    comment:
      v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
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        v: hasValue() or (children().count() > id.count())
      source:
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        link: 5.0
        link: .0
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        v: ext-1
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        v: Must have either extensions or value[x], not both
      expression:
        v: extension.exists() != value.exists()
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        link: 5.0
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    is modifier:
      v: false
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      v: Unique id for inter-element referencing
    definition:
      v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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    is modifier:
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    is summary:
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url
v: id

identity:
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map:
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id:
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path:
  v: Extension.extension
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      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  ordered:
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  rules:
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short:
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definition:
  v: An Extension
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  source:
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    link: 5.0
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is modifier:
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id:
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path:
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slice name:
  v: chromosome
short:
  v: Chromosome containing genetic finding
definition:
  v: Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
comment:
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id:
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path:
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  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:chromosome.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
min:
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max:
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  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
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is summary:
  v: false
mapping:
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  map:
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id:
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path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
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    value: url
      v: uri
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    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: chromosome
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:chromosome.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: Chromosome containing genetic finding
definition:
  v: Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
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  min:
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type:
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  v: ext-1
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  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: example
  description:
    v: The chromosome containing the genetic finding
  value set:
    v: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0
    link: 0.2
    link: .0
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:genomeBuild
path:
  v: Extension.extension
slice name:
  v: genomeBuild
short:
  v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
definition:
  v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
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  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
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    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
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    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
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is modifier:
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is summary:
  v: false

id:
  v: Extension.extension:genomeBuild.id
path:
  v: Extension.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
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type:
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    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
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is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:genomeBuild.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
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min:
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max:
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    v: 0
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type:
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    v: error
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  expression:
    v: hasValue() or (children().count() > id.count())
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    link: 5.0
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constraint:
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    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
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is modifier:
  v: false
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  v: false
mapping:
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    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:genomeBuild.url
path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
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max:
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fixed: uri
  v: genomeBuild
is modifier:
  v: false
is summary:
  v: false
mapping:
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    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:genomeBuild.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
definition:
  v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
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max:
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  min:
    v: 0
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    v: 1
type:
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    v: string
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:orientation
path:
  v: Extension.extension
slice name:
  v: orientation
short:
  v: sense | antisense
definition:
  v: A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
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max:
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base:
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type:
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constraint:
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    v: ele-1
  severity:
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  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
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    v: ext-1
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    v: error
  human:
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  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false

id:
  v: Extension.extension:orientation.id
path:
  v: Extension.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
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base:
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type:
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    value: url
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    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
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mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:orientation.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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  v: 0
max:
  v: *
base:
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    v: Element.extension
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    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
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    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
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mapping:
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    v: rim
  map:
    v: n/a

id:
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path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
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    v: 1
  max:
    v: 1
type:
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    value: url
      v: uri
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    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: orientation
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:orientation.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: sense | antisense
definition:
  v: A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
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    v: 1
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    v: ele-1
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    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: required
  description:
    v: Type for orientation
  value set:
    v: http://hl7.org/fhir/ValueSet/orientation-type|5.0.0
    link: 5.0
    link: .0
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:referenceSeqId
path:
  v: Extension.extension
slice name:
  v: referenceSeqId
short:
  v: Reference identifier
definition:
  v: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
comment:
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    v: All FHIR elements must have a @value or children
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    link: 5.0
    link: .0
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    v: ext-1
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    v: Must have either extensions or value[x], not both
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    v: extension.exists() != value.exists()
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    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
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    link: .0
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  v: false
is summary:
  v: false

id:
  v: Extension.extension:referenceSeqId.id
path:
  v: Extension.extension.id
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  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
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    v: 0
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    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
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    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
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  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:referenceSeqId.extension
path:
  v: Extension.extension.extension
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    type:
      v: value
    path:
      v: url
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    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
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  v: 0
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  v: *
base:
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    v: Element.extension
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    v: 0
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  code:
    v: Extension
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
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    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
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    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
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  v: false
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  v: false
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  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:referenceSeqId.url
path:
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representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
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  v: 1
max:
  v: 1
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    v: 1
  max:
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  extension:
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    value: url
      v: uri
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    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: referenceSeqId
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:referenceSeqId.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: Reference identifier
definition:
  v: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
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  v: 0
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  v: ext-1
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  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: example
  description:
    v: Reference identifier for reference sequence
  value set:
    v: http://hl7.org/fhir/4.3/ValueSet/R4B-sequence-referenceSeq-for-R5|0.0.1-snapshot-2
    link: 4.3
    link: 0.0
    link: .1
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:referenceSeqPointer
path:
  v: Extension.extension
slice name:
  v: referenceSeqPointer
short:
  v: A pointer to another MolecularSequence entity as reference sequence
definition:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
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  v: 0
max:
  v: 1
base:
  path:
    v: Element.extension
  min:
    v: 0
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    v: *
type:
  code:
    v: Extension
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  key:
    v: ele-1
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false

id:
  v: Extension.extension:referenceSeqPointer.id
path:
  v: Extension.extension.id
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  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
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    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
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  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
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  v: Extension.extension.extension
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  discriminator:
    type:
      v: value
    path:
      v: url
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    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
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    v: *
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  code:
    v: Extension
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  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
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  v: false
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  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:referenceSeqPointer.url
path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
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  v: 1
max:
  v: 1
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  path:
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    v: 1
  max:
    v: 1
type:
  extension:
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      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: referenceSeqPointer
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:referenceSeqPointer.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: A pointer to another MolecularSequence entity as reference sequence
definition:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
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max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
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path:
  v: Extension.extension
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  v: referenceSeqString
short:
  v: A string to represent reference sequence
definition:
  v: A string like "ACGT".
comment:
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max:
  v: 1
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  path:
    v: Element.extension
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    v: 0
  max:
    v: *
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    v: Extension
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  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
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is summary:
  v: false

id:
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path:
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representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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max:
  v: 1
base:
  path:
    v: Element.id
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    v: 0
  max:
    v: 1
type:
  extension:
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      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
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path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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max:
  v: *
base:
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    v: 0
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    v: *
type:
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    v: Extension
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  key:
    v: ele-1
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    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
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    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
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  v: false
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  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:referenceSeqString.url
path:
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representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
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    v: 1
  max:
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type:
  extension:
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    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: referenceSeqString
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:referenceSeqString.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: A string to represent reference sequence
definition:
  v: A string like "ACGT".
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:strand
path:
  v: Extension.extension
slice name:
  v: strand
short:
  v: watson | crick
definition:
  v: An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
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max:
  v: 1
base:
  path:
    v: Element.extension
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    v: 0
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    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
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    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
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is summary:
  v: false

id:
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path:
  v: Extension.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
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    v: 1
type:
  extension:
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      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:strand.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:strand.url
path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: strand
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:strand.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: watson | crick
definition:
  v: An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: required
  description:
    v: Type for strand
  value set:
    v: http://hl7.org/fhir/ValueSet/strand-type|5.0.0
    link: 5.0
    link: .0
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:windowStart
path:
  v: Extension.extension
slice name:
  v: windowStart
short:
  v: Start position of the window on the reference sequence
definition:
  v: Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false

id:
  v: Extension.extension:windowStart.id
path:
  v: Extension.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:windowStart.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:windowStart.url
path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: windowStart
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:windowStart.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: Start position of the window on the reference sequence
definition:
  v: Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: integer
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:windowEnd
path:
  v: Extension.extension
slice name:
  v: windowEnd
short:
  v: End position of the window on the reference sequence
definition:
  v: End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false

id:
  v: Extension.extension:windowEnd.id
path:
  v: Extension.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:windowEnd.extension
path:
  v: Extension.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Extension.extension:windowEnd.url
path:
  v: Extension.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: windowEnd
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.extension:windowEnd.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: End position of the window on the reference sequence
definition:
  v: End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: integer
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.url
path:
  v: Extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.referenceSeq
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Extension.value[x]
path:
  v: Extension.value[x]
short:
  v: Value of extension
definition:
  v: Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R5/extensibility.html) for a list).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: base64Binary
type:
  code:
    v: boolean
type:
  code:
    v: canonical
type:
  code:
    v: code
type:
  code:
    v: date
type:
  code:
    v: dateTime
type:
  code:
    v: decimal
type:
  code:
    v: id
type:
  code:
    v: instant
type:
  code:
    v: integer
type:
  code:
    v: integer64
type:
  code:
    v: markdown
type:
  code:
    v: oid
type:
  code:
    v: positiveInt
type:
  code:
    v: string
type:
  code:
    v: time
type:
  code:
    v: unsignedInt
type:
  code:
    v: uri
type:
  code:
    v: url
type:
  code:
    v: uuid
type:
  code:
    v: Address
type:
  code:
    v: Age
type:
  code:
    v: Annotation
type:
  code:
    v: Attachment
type:
  code:
    v: CodeableConcept
type:
  code:
    v: CodeableReference
type:
  code:
    v: Coding
type:
  code:
    v: ContactPoint
type:
  code:
    v: Count
type:
  code:
    v: Distance
type:
  code:
    v: Duration
type:
  code:
    v: HumanName
type:
  code:
    v: Identifier
type:
  code:
    v: Money
type:
  code:
    v: Period
type:
  code:
    v: Quantity
type:
  code:
    v: Range
type:
  code:
    v: Ratio
type:
  code:
    v: RatioRange
type:
  code:
    v: Reference
type:
  code:
    v: SampledData
type:
  code:
    v: Signature
type:
  code:
    v: Timing
type:
  code:
    v: ContactDetail
type:
  code:
    v: DataRequirement
type:
  code:
    v: Expression
type:
  code:
    v: ParameterDefinition
type:
  code:
    v: RelatedArtifact
type:
  code:
    v: TriggerDefinition
type:
  code:
    v: UsageContext
type:
  code:
    v: Availability
type:
  code:
    v: ExtendedContactDetail
type:
  code:
    v: Dosage
type:
  code:
    v: Meta
condition:
  v: ext-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element|5.0.0
    link: 5.0
    link: .0
is modifier:
  v: false
is summary:
  v: false

identity:
  v: rim
map:
  v: N/A

element:
  id:
    v: Extension
  path:
    v: Extension
  short:
    v: A sequence used as reference
  definition:
    v: A sequence that is used as a reference to describe variants that are present in a sequence analyzed.
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  min:
    v: 0
  max:
    v: 1
  base:
    path:
      v: Extension
    min:
      v: 0
    max:
      v: *
element:
  id:
    v: Extension.extension
  path:
    v: Extension.extension
  slicing:
    discriminator:
      type:
        v: value
      path:
        v: url
    ordered:
      v: false
    rules:
      v: closed
  min:
    v: 0
  max:
    v: *
  base:
    path:
      v: Extension.extension
    min:
      v: 0
    max:
      v: *
element:
  id:
    v: Extension.extension:chromosome
  path:
    v: Extension.extension
  slice name:
    v: chromosome
  short:
    v: Chromosome containing genetic finding
  definition:
    v: Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  min:
    v: 0
  max:
    v: 1
  base:
    path:
      v: Extension.extension
    min:
      v: 0
    max:
      v: *
element:
  id:
    v: Extension.extension:chromosome.url
  path:
    v: Extension.extension.url
  min:
    v: 1
  max:
    v: 1
  base:
    path:
      v: Extension.url
    min:
      v: 1
    max:
      v: 1
  fixed: uri
    v: chromosome
element:
  id:
    v: Extension.extension:chromosome.value[x]
  path:
    v: Extension.extension.value[x]
  short:
    v: Chromosome containing genetic finding
  definition:
    v: Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  base:
    path:
      v: Extension.value[x]
    min:
      v: 0
    max:
      v: 1
  type:
    code:
      v: CodeableConcept
  binding:
    strength:
      v: example
    description:
      v: The chromosome containing the genetic finding
    value set:
      v: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0
      link: 0.2
      link: .0
element:
  id:
    v: Extension.extension:genomeBuild
  path:
    v: Extension.extension
  slice name:
    v: genomeBuild
  short:
    v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
  definition:
    v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  min:
    v: 0
  max:
    v: 1
  base:
    path:
      v: Extension.extension
    min:
      v: 0
    max:
      v: *
element:
  id:
    v: Extension.extension:genomeBuild.url
  path:
    v: Extension.extension.url
  min:
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  max:
    v: 1
  base:
    path:
      v: Extension.url
    min:
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    max:
      v: 1
  fixed: uri
    v: genomeBuild
element:
  id:
    v: Extension.extension:genomeBuild.value[x]
  path:
    v: Extension.extension.value[x]
  short:
    v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
  definition:
    v: The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  base:
    path:
      v: Extension.value[x]
    min:
      v: 0
    max:
      v: 1
  type:
    code:
      v: string
element:
  id:
    v: Extension.extension:orientation
  path:
    v: Extension.extension
  slice name:
    v: orientation
  short:
    v: sense | antisense
  definition:
    v: A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
  comment:
    v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
  min:
    v: 0
  max:
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  base:
    path:
      v: Extension.extension

v: 0

v: *

id:
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path:
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min:
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max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: orientation

id:
  v: Extension.extension:orientation.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: sense | antisense
definition:
  v: A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
binding:
  strength:
    v: required
  description:
    v: Type for orientation
  value set:
    v: http://hl7.org/fhir/ValueSet/orientation-type|5.0.0
    link: 5.0
    link: .0

id:
  v: Extension.extension:referenceSeqId
path:
  v: Extension.extension
slice name:
  v: referenceSeqId
short:
  v: Reference identifier
definition:
  v: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
  v: Extension.extension:referenceSeqId.url
path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: referenceSeqId

id:
  v: Extension.extension:referenceSeqId.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: Reference identifier
definition:
  v: Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
binding:
  strength:
    v: example
  description:
    v: Reference identifier for reference sequence
  value set:
    v: http://hl7.org/fhir/4.3/ValueSet/R4B-sequence-referenceSeq-for-R5|0.0.1-snapshot-2
    link: 4.3
    link: 0.0
    link: .1

id:
  v: Extension.extension:referenceSeqPointer
path:
  v: Extension.extension
slice name:
  v: referenceSeqPointer
short:
  v: A pointer to another MolecularSequence entity as reference sequence
definition:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
  v: Extension.extension:referenceSeqPointer.url
path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: referenceSeqPointer

id:
  v: Extension.extension:referenceSeqPointer.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: A pointer to another MolecularSequence entity as reference sequence
definition:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference

id:
  v: Extension.extension:referenceSeqString
path:
  v: Extension.extension
slice name:
  v: referenceSeqString
short:
  v: A string to represent reference sequence
definition:
  v: A string like "ACGT".
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
  v: Extension.extension:referenceSeqString.url
path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: referenceSeqString

id:
  v: Extension.extension:referenceSeqString.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: A string to represent reference sequence
definition:
  v: A string like "ACGT".
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string

id:
  v: Extension.extension:strand
path:
  v: Extension.extension
slice name:
  v: strand
short:
  v: watson | crick
definition:
  v: An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
  v: Extension.extension:strand.url
path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: strand

id:
  v: Extension.extension:strand.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: watson | crick
definition:
  v: An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
binding:
  strength:
    v: required
  description:
    v: Type for strand
  value set:
    v: http://hl7.org/fhir/ValueSet/strand-type|5.0.0
    link: 5.0
    link: .0

id:
  v: Extension.extension:windowStart
path:
  v: Extension.extension
slice name:
  v: windowStart
short:
  v: Start position of the window on the reference sequence
definition:
  v: Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
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path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: windowStart

id:
  v: Extension.extension:windowStart.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: Start position of the window on the reference sequence
definition:
  v: Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: integer

id:
  v: Extension.extension:windowEnd
path:
  v: Extension.extension
slice name:
  v: windowEnd
short:
  v: End position of the window on the reference sequence
definition:
  v: End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.extension
  min:
    v: 0
  max:
    v: *

id:
  v: Extension.extension:windowEnd.url
path:
  v: Extension.extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: windowEnd

id:
  v: Extension.extension:windowEnd.value[x]
path:
  v: Extension.extension.value[x]
short:
  v: End position of the window on the reference sequence
definition:
  v: End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
comment:
  v: `MolecularSequence.referenceSeq` has no related element in R5:MolecularSequence
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: integer

id:
  v: Extension.url
path:
  v: Extension.url
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
fixed: uri
  v: http://hl7.org/fhir/4.3/StructureDefinition/extension-MolecularSequence.referenceSeq