FHIR Cross-Version Extensions package for FHIR R5 from FHIR R4
0.0.1-snapshot-2 - informative International flag

FHIR Cross-Version Extensions package for FHIR R5 from FHIR R4 - Version 0.0.1-snapshot-2. See the Directory of published versions

Extension: Cross-version Extension for R4.MolecularSequence.referenceSeq for use in FHIR R5

Official URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.referenceSeq Version: 0.0.1-snapshot-2
Standards status: Informative Maturity Level: 0 Computable Name: Ext_R4_MolecularSequence_referenceSeq
This cross-version extension represents MolecularSequence.referenceSeq from http://hl7.org/fhir/StructureDefinition/MolecularSequence 4.0.1 for use in FHIR R5.

Context of Use

This extension may be used on the following element(s):

  • Element ID MolecularSequence

Usage info

Usages:

  • This Extension is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

Summary

Simple Extension with the type base64Binary, boolean, canonical, code, date, dateTime, decimal, id, instant, integer, integer64, markdown, oid, positiveInt, string, time, unsignedInt, uri, url, uuid, Address, Age, Annotation, Attachment, CodeableConcept, CodeableReference, Coding, ContactPoint, Count, Distance, Duration, HumanName, Identifier, Money, Period, Quantity, Range, Ratio, RatioRange, Reference, SampledData, Signature, Timing, ContactDetail, DataRequirement, Expression, ParameterDefinition, RelatedArtifact, TriggerDefinition, UsageContext, Availability, ExtendedContactDetail, Dosage, Meta: This cross-version extension represents MolecularSequence.referenceSeq from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 for use in FHIR R5.

Maturity: 0

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..1 Extension(5.0.0) A sequence used as reference
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
.... extension:chromosome 0..1 Extension Chromosome containing genetic finding
..... url 1..1 uri "chromosome"
..... value[x] 0..1 CodeableConcept ​Chromosome containing genetic finding
Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): Chromosome number for human.
.... extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
.... extension:orientation 0..1 Extension sense | antisense
..... url 1..1 uri "orientation"
..... value[x] 0..1 code sense | antisense
Binding: R4_orientation_type_for_R5 (0.0.1-snapshot-2) (required): Type for orientation.
.... extension:referenceSeqId 0..1 Extension Reference identifier
..... url 1..1 uri "referenceSeqId"
..... value[x] 0..1 CodeableConcept Reference identifier
Binding: R4_sequence_referenceSeq_for_R5 (0.0.1-snapshot-2) (example): Reference identifier.
.... extension:referenceSeqPointer 0..1 Extension A pointer to another MolecularSequence entity as reference sequence
..... url 1..1 uri "referenceSeqPointer"
..... value[x] 0..1 Reference() A pointer to another MolecularSequence entity as reference sequence
.... extension:referenceSeqString 0..1 Extension A string to represent reference sequence
..... url 1..1 uri "referenceSeqString"
..... value[x] 0..1 string A string to represent reference sequence
.... extension:strand 0..1 Extension watson | crick
..... url 1..1 uri "strand"
..... value[x] 0..1 code watson | crick
Binding: R4_strand_type_for_R5 (0.0.1-snapshot-2) (required): Type for strand.
.... extension:windowStart 0..1 Extension Start position of the window on the reference sequence
..... url 1..1 uri "windowStart"
..... value[x] 0..1 integer Start position of the window on the reference sequence
.... extension:windowEnd 0..1 Extension End position of the window on the reference sequence
..... url 1..1 uri "windowEnd"
..... value[x] 0..1 integer End position of the window on the reference sequence
... url 1..1 uri "http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.referenceSeq"

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..1 Extension(5.0.0) A sequence used as reference
Constraints: ext-1
... id 0..1 id Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
Constraints: ext-1
.... extension:chromosome 0..1 Extension Chromosome containing genetic finding
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "chromosome"
..... value[x] 0..1 CodeableConcept ​Chromosome containing genetic finding
Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): Chromosome number for human.
.... extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
.... extension:orientation 0..1 Extension sense | antisense
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "orientation"
..... value[x] 0..1 code sense | antisense
Binding: R4_orientation_type_for_R5 (0.0.1-snapshot-2) (required): Type for orientation.
.... extension:referenceSeqId 0..1 Extension Reference identifier
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqId"
..... value[x] 0..1 CodeableConcept Reference identifier
Binding: R4_sequence_referenceSeq_for_R5 (0.0.1-snapshot-2) (example): Reference identifier.
.... extension:referenceSeqPointer 0..1 Extension A pointer to another MolecularSequence entity as reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqPointer"
..... value[x] 0..1 Reference() A pointer to another MolecularSequence entity as reference sequence
.... extension:referenceSeqString 0..1 Extension A string to represent reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqString"
..... value[x] 0..1 string A string to represent reference sequence
.... extension:strand 0..1 Extension watson | crick
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "strand"
..... value[x] 0..1 code watson | crick
Binding: R4_strand_type_for_R5 (0.0.1-snapshot-2) (required): Type for strand.
.... extension:windowStart 0..1 Extension Start position of the window on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "windowStart"
..... value[x] 0..1 integer Start position of the window on the reference sequence
.... extension:windowEnd 0..1 Extension End position of the window on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "windowEnd"
..... value[x] 0..1 integer End position of the window on the reference sequence
... url 1..1 uri "http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.referenceSeq"
.... valueBase64Binary base64Binary
.... valueBoolean boolean
.... valueCanonical canonical(Any)
.... valueCode code
.... valueDate date
.... valueDateTime dateTime
.... valueDecimal decimal
.... valueId id
.... valueInstant instant
.... valueInteger integer
.... valueInteger64 integer64
.... valueMarkdown markdown
.... valueOid oid
.... valuePositiveInt positiveInt
.... valueString string
.... valueTime time
.... valueUnsignedInt unsignedInt
.... valueUri uri
.... valueUrl url
.... valueUuid uuid
.... valueAddress Address
.... valueAge Age
.... valueAnnotation Annotation
.... valueAttachment Attachment
.... valueCodeableConcept CodeableConcept
.... valueCodeableReference CodeableReference
.... valueCoding Coding
.... valueContactPoint ContactPoint
.... valueCount Count
.... valueDistance Distance
.... valueDuration Duration
.... valueHumanName HumanName
.... valueIdentifier Identifier
.... valueMoney Money
.... valuePeriod Period
.... valueQuantity Quantity
.... valueRange Range
.... valueRatio Ratio
.... valueRatioRange RatioRange
.... valueReference Reference(Any)
.... valueSampledData SampledData
.... valueSignature Signature
.... valueTiming Timing
.... valueContactDetail ContactDetail
.... valueDataRequirement DataRequirement
.... valueExpression Expression
.... valueParameterDefinition ParameterDefinition
.... valueRelatedArtifact RelatedArtifact
.... valueTriggerDefinition TriggerDefinition
.... valueUsageContext UsageContext
.... valueAvailability Availability
.... valueExtendedContactDetail ExtendedContactDetail
.... valueDosage Dosage
.... valueMeta Meta

doco Documentation for this format

This structure is derived from Extension

Summary

Simple Extension with the type base64Binary, boolean, canonical, code, date, dateTime, decimal, id, instant, integer, integer64, markdown, oid, positiveInt, string, time, unsignedInt, uri, url, uuid, Address, Age, Annotation, Attachment, CodeableConcept, CodeableReference, Coding, ContactPoint, Count, Distance, Duration, HumanName, Identifier, Money, Period, Quantity, Range, Ratio, RatioRange, Reference, SampledData, Signature, Timing, ContactDetail, DataRequirement, Expression, ParameterDefinition, RelatedArtifact, TriggerDefinition, UsageContext, Availability, ExtendedContactDetail, Dosage, Meta: This cross-version extension represents MolecularSequence.referenceSeq from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 for use in FHIR R5.

Maturity: 0

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..1 Extension(5.0.0) A sequence used as reference
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
.... extension:chromosome 0..1 Extension Chromosome containing genetic finding
..... url 1..1 uri "chromosome"
..... value[x] 0..1 CodeableConcept ​Chromosome containing genetic finding
Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): Chromosome number for human.
.... extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
.... extension:orientation 0..1 Extension sense | antisense
..... url 1..1 uri "orientation"
..... value[x] 0..1 code sense | antisense
Binding: R4_orientation_type_for_R5 (0.0.1-snapshot-2) (required): Type for orientation.
.... extension:referenceSeqId 0..1 Extension Reference identifier
..... url 1..1 uri "referenceSeqId"
..... value[x] 0..1 CodeableConcept Reference identifier
Binding: R4_sequence_referenceSeq_for_R5 (0.0.1-snapshot-2) (example): Reference identifier.
.... extension:referenceSeqPointer 0..1 Extension A pointer to another MolecularSequence entity as reference sequence
..... url 1..1 uri "referenceSeqPointer"
..... value[x] 0..1 Reference() A pointer to another MolecularSequence entity as reference sequence
.... extension:referenceSeqString 0..1 Extension A string to represent reference sequence
..... url 1..1 uri "referenceSeqString"
..... value[x] 0..1 string A string to represent reference sequence
.... extension:strand 0..1 Extension watson | crick
..... url 1..1 uri "strand"
..... value[x] 0..1 code watson | crick
Binding: R4_strand_type_for_R5 (0.0.1-snapshot-2) (required): Type for strand.
.... extension:windowStart 0..1 Extension Start position of the window on the reference sequence
..... url 1..1 uri "windowStart"
..... value[x] 0..1 integer Start position of the window on the reference sequence
.... extension:windowEnd 0..1 Extension End position of the window on the reference sequence
..... url 1..1 uri "windowEnd"
..... value[x] 0..1 integer End position of the window on the reference sequence
... url 1..1 uri "http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.referenceSeq"

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..1 Extension(5.0.0) A sequence used as reference
Constraints: ext-1
... id 0..1 id Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Closed by value:url
Constraints: ext-1
.... extension:chromosome 0..1 Extension Chromosome containing genetic finding
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "chromosome"
..... value[x] 0..1 CodeableConcept ​Chromosome containing genetic finding
Binding: http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0 (example): Chromosome number for human.
.... extension:genomeBuild 0..1 Extension The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 string The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'
.... extension:orientation 0..1 Extension sense | antisense
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "orientation"
..... value[x] 0..1 code sense | antisense
Binding: R4_orientation_type_for_R5 (0.0.1-snapshot-2) (required): Type for orientation.
.... extension:referenceSeqId 0..1 Extension Reference identifier
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqId"
..... value[x] 0..1 CodeableConcept Reference identifier
Binding: R4_sequence_referenceSeq_for_R5 (0.0.1-snapshot-2) (example): Reference identifier.
.... extension:referenceSeqPointer 0..1 Extension A pointer to another MolecularSequence entity as reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqPointer"
..... value[x] 0..1 Reference() A pointer to another MolecularSequence entity as reference sequence
.... extension:referenceSeqString 0..1 Extension A string to represent reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "referenceSeqString"
..... value[x] 0..1 string A string to represent reference sequence
.... extension:strand 0..1 Extension watson | crick
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "strand"
..... value[x] 0..1 code watson | crick
Binding: R4_strand_type_for_R5 (0.0.1-snapshot-2) (required): Type for strand.
.... extension:windowStart 0..1 Extension Start position of the window on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "windowStart"
..... value[x] 0..1 integer Start position of the window on the reference sequence
.... extension:windowEnd 0..1 Extension End position of the window on the reference sequence
Constraints: ext-1
..... id 0..1 id Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "windowEnd"
..... value[x] 0..1 integer End position of the window on the reference sequence
... url 1..1 uri "http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.referenceSeq"
.... valueBase64Binary base64Binary
.... valueBoolean boolean
.... valueCanonical canonical(Any)
.... valueCode code
.... valueDate date
.... valueDateTime dateTime
.... valueDecimal decimal
.... valueId id
.... valueInstant instant
.... valueInteger integer
.... valueInteger64 integer64
.... valueMarkdown markdown
.... valueOid oid
.... valuePositiveInt positiveInt
.... valueString string
.... valueTime time
.... valueUnsignedInt unsignedInt
.... valueUri uri
.... valueUrl url
.... valueUuid uuid
.... valueAddress Address
.... valueAge Age
.... valueAnnotation Annotation
.... valueAttachment Attachment
.... valueCodeableConcept CodeableConcept
.... valueCodeableReference CodeableReference
.... valueCoding Coding
.... valueContactPoint ContactPoint
.... valueCount Count
.... valueDistance Distance
.... valueDuration Duration
.... valueHumanName HumanName
.... valueIdentifier Identifier
.... valueMoney Money
.... valuePeriod Period
.... valueQuantity Quantity
.... valueRange Range
.... valueRatio Ratio
.... valueRatioRange RatioRange
.... valueReference Reference(Any)
.... valueSampledData SampledData
.... valueSignature Signature
.... valueTiming Timing
.... valueContactDetail ContactDetail
.... valueDataRequirement DataRequirement
.... valueExpression Expression
.... valueParameterDefinition ParameterDefinition
.... valueRelatedArtifact RelatedArtifact
.... valueTriggerDefinition TriggerDefinition
.... valueUsageContext UsageContext
.... valueAvailability Availability
.... valueExtendedContactDetail ExtendedContactDetail
.... valueDosage Dosage
.... valueMeta Meta

doco Documentation for this format

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

PathConformanceValueSetURI
Extension.extension:chromosome.value[x]example​http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0
http://terminology.hl7.org/ValueSet/chromosome-human|0.2.0
Extension.extension:orientation.value[x]requiredR4_orientation_type_for_R5
http://hl7.org/fhir/4.0/ValueSet/R4-orientation-type-for-R5|0.0.1-snapshot-2
From this IG
Extension.extension:referenceSeqId.value[x]exampleR4_sequence_referenceSeq_for_R5
http://hl7.org/fhir/4.0/ValueSet/R4-sequence-referenceSeq-for-R5|0.0.1-snapshot-2
From this IG
Extension.extension:strand.value[x]requiredR4_strand_type_for_R5
http://hl7.org/fhir/4.0/ValueSet/R4-strand-type-for-R5|0.0.1-snapshot-2
From this IG

Constraints

IdGradePath(s)DetailsRequirements
ele-1errorExtension, Extension.extension, Extension.extension:chromosome, Extension.extension:chromosome.extension, Extension.extension:chromosome.value[x], Extension.extension:genomeBuild, Extension.extension:genomeBuild.extension, Extension.extension:genomeBuild.value[x], Extension.extension:orientation, Extension.extension:orientation.extension, Extension.extension:orientation.value[x], Extension.extension:referenceSeqId, Extension.extension:referenceSeqId.extension, Extension.extension:referenceSeqId.value[x], Extension.extension:referenceSeqPointer, Extension.extension:referenceSeqPointer.extension, Extension.extension:referenceSeqPointer.value[x], Extension.extension:referenceSeqString, Extension.extension:referenceSeqString.extension, Extension.extension:referenceSeqString.value[x], Extension.extension:strand, Extension.extension:strand.extension, Extension.extension:strand.value[x], Extension.extension:windowStart, Extension.extension:windowStart.extension, Extension.extension:windowStart.value[x], Extension.extension:windowEnd, Extension.extension:windowEnd.extension, Extension.extension:windowEnd.value[x], Extension.value[x]All FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1errorExtension, Extension.extension, Extension.extension:chromosome, Extension.extension:chromosome.extension, Extension.extension:genomeBuild, Extension.extension:genomeBuild.extension, Extension.extension:orientation, Extension.extension:orientation.extension, Extension.extension:referenceSeqId, Extension.extension:referenceSeqId.extension, Extension.extension:referenceSeqPointer, Extension.extension:referenceSeqPointer.extension, Extension.extension:referenceSeqString, Extension.extension:referenceSeqString.extension, Extension.extension:strand, Extension.extension:strand.extension, Extension.extension:windowStart, Extension.extension:windowStart.extension, Extension.extension:windowEnd, Extension.extension:windowEnd.extensionMust have either extensions or value[x], not both
: extension.exists() != value.exists()