Generated Narrative: StructureDefinition ext-R4-SubstanceNucleicAcid.subunit Name Flags Card. Type Description & Constraints Extension 0..* Extension R4: Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times (new) #xD; Slices for extension 0..* Extension Extension Slice: Unordered, Open by value:url #xD; extension:subunit 0..1 Extension R4: Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts (new) #xD; url 1..1 uri "subunit" #xD; value[x] 0..1 integer Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts #xD; extension:sequence 0..1 Extension R4: Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured (new) #xD; url 1..1 uri "sequence" #xD; value[x] 0..1 string Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured #xD; extension:length 0..1 Extension R4: The length of the sequence shall be captured (new) #xD; url 1..1 uri "length" #xD; value[x] 0..1 integer The length of the sequence shall be captured #xD; extension:sequenceAttachment 0..1 Extension R4: (TBC) (new) #xD; url 1..1 uri "sequenceAttachment" #xD; value[x] 0..1 Attachment (TBC) #xD; extension:fivePrime 0..1 Extension R4: The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant (new) #xD; url 1..1 uri "fivePrime" #xD; <a href="StructureDefinition-ext-R4-SubstanceNucleicAcid.subunit-definitions.html#Extension.extension:fivePrime.value[x]" title="The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.">value[x] 0..1 CodeableConcept The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant #xD; extension:threePrime 0..1 Extension R4: The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant (new) #xD; url 1..1 uri "threePrime" #xD; <a href="StructureDefinition-ext-R4-SubstanceNucleicAcid.subunit-definitions.html#Extension.extension:threePrime.value[x]" title="The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.">value[x] 0..1 CodeableConcept The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant #xD; extension:linkage 0..* Extension R4: The linkages between sugar residues will also be captured (new) #xD; Slices for extension 0..* Extension Extension Slice: Unordered, Open by value:url #xD; extension:connectivity 0..1 Extension R4: The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified (new) #xD; url 1..1 uri "connectivity" #xD; <a href="StructureDefinition-ext-R4-SubstanceNucleicAcid.subunit-definitions.html#Extension.extension:linkage.extension:connectivity.value[x]" title="The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified.">value[x] 0..1 string The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified #xD; extension:identifier 0..1 Extension R4: Each linkage will be registered as a fragment and have an ID (new) #xD; url 1..1 uri "identifier" #xD; value[x] 0..1 Identifier Each linkage will be registered as a fragment and have an ID #xD; extension:name 0..1 Extension R4: Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage (new) #xD; url 1..1 uri "name" #xD; value[x] 0..1 string Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage #xD; extension:residueSite 0..1 Extension R4: Residues shall be captured as described in 5.3.6.8.3 (new) #xD; url 1..1 uri "residueSite" #xD; value[x] 0..1 string Residues shall be captured as described in 5.3.6.8.3 #xD; url 1..1 uri "linkage" #xD; value[x] 0..0 Value of extension #xD; extension:sugar 0..* Extension R4: 5.3.6.8.1 Sugar ID (Mandatory) (new) #xD; Slices for extension 0..* Extension Extension Slice: Unordered, Open by value:url #xD; extension:identifier 0..1 Extension R4: The Substance ID of the sugar or sugar-like component that make up the nucleotide (new) #xD; url 1..1 uri "identifier" #xD; value[x] 0..1 Identifier The Substance ID of the sugar or sugar-like component that make up the nucleotide #xD; extension:name 0..1 Extension R4: The name of the sugar or sugar-like component that make up the nucleotide (new) #xD; url 1..1 uri "name" #xD; value[x] 0..1 string The name of the sugar or sugar-like component that make up the nucleotide #xD; extension:residueSite 0..1 Extension R4: The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above (new) #xD; url 1..1 uri "residueSite" #xD; value[x] 0..1 string The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above #xD; url 1..1 uri "sugar" #xD; value[x] 0..0 Value of extension #xD; url 1..1 uri "http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceNucleicAcid.subunit" #xD; value[x] 0..0 Value of extension #xD; Documentation for this format
R4: Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times (new)
R4: `SubstanceNucleicAcid.subunit` (new:BackboneElement)
This extension is part of the cross-version definitions generated to enable use of the element `SubstanceNucleicAcid.subunit` as defined in FHIR R4 in FHIR STU3. The source element is defined as: `SubstanceNucleicAcid.subunit` 0..* `BackboneElement` Following are the generation technical comments: Element `SubstanceNucleicAcid.subunit` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `SubstanceNucleicAcid.subunit` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
All FHIR elements must have a @value or children
hasValue() | (children().count() > id.count())
Must have either extensions or value[x], not both
exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])
unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
Extensions are always sliced by (at least) url
R4: Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts (new)
R4: `SubstanceNucleicAcid.subunit.subunit` (new:integer)
Element `SubstanceNucleicAcid.subunit.subunit` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.subunit` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.subunit` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Additional Content defined by implementations
May be used to represent additional information that is not part of the basic definition of the element. In order to make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
Source of the definition for the extension code - a logical name or a URL.
The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts
Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
R4: Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured (new)
R4: `SubstanceNucleicAcid.subunit.sequence` (new:string)
Element `SubstanceNucleicAcid.subunit.sequence` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sequence` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sequence` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured
Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
R4: The length of the sequence shall be captured (new)
R4: `SubstanceNucleicAcid.subunit.length` (new:integer)
Element `SubstanceNucleicAcid.subunit.length` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.length` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.length` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The length of the sequence shall be captured
The length of the sequence shall be captured.
R4: `SubstanceNucleicAcid.subunit.sequenceAttachment` (new:Attachment)
Element `SubstanceNucleicAcid.subunit.sequenceAttachment` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sequenceAttachment` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sequenceAttachment` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
R4: The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant (new)
R4: `SubstanceNucleicAcid.subunit.fivePrime` (new:CodeableConcept)
Element `SubstanceNucleicAcid.subunit.fivePrime` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.fivePrime` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.fivePrime` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant
The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.
R4: The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant (new)
R4: `SubstanceNucleicAcid.subunit.threePrime` (new:CodeableConcept)
Element `SubstanceNucleicAcid.subunit.threePrime` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.threePrime` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.threePrime` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant
The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.
R4: The linkages between sugar residues will also be captured (new)
R4: `SubstanceNucleicAcid.subunit.linkage` (new:BackboneElement)
Element `SubstanceNucleicAcid.subunit.linkage` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.linkage` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.linkage` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
R4: The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified (new)
R4: `SubstanceNucleicAcid.subunit.linkage.connectivity` (new:string)
Element `SubstanceNucleicAcid.subunit.linkage.connectivity` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.linkage` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.linkage.connectivity` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.linkage.connectivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified
The entity that links the sugar residues together should also be captured for nearly all naturally occurring nucleic acid the linkage is a phosphate group. For many synthetic oligonucleotides phosphorothioate linkages are often seen. Linkage connectivity is assumed to be 3’-5’. If the linkage is either 3’-3’ or 5’-5’ this should be specified.
R4: Each linkage will be registered as a fragment and have an ID (new)
R4: `SubstanceNucleicAcid.subunit.linkage.identifier` (new:Identifier)
Element `SubstanceNucleicAcid.subunit.linkage.identifier` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.linkage` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.linkage.identifier` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.linkage.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Each linkage will be registered as a fragment and have an ID
Each linkage will be registered as a fragment and have an ID.
R4: Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage (new)
R4: `SubstanceNucleicAcid.subunit.linkage.name` (new:string)
Element `SubstanceNucleicAcid.subunit.linkage.name` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.linkage` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.linkage.name` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.linkage.name` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage
Each linkage will be registered as a fragment and have at least one name. A single name shall be assigned to each linkage.
R4: Residues shall be captured as described in 5.3.6.8.3 (new)
R4: `SubstanceNucleicAcid.subunit.linkage.residueSite` (new:string)
Element `SubstanceNucleicAcid.subunit.linkage.residueSite` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.linkage` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.linkage.residueSite` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.linkage.residueSite` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Residues shall be captured as described in 5.3.6.8.3
Residues shall be captured as described in 5.3.6.8.3.
Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).
R4: 5.3.6.8.1 Sugar ID (Mandatory) (new)
R4: `SubstanceNucleicAcid.subunit.sugar` (new:BackboneElement)
Element `SubstanceNucleicAcid.subunit.sugar` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sugar` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sugar` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
R4: The Substance ID of the sugar or sugar-like component that make up the nucleotide (new)
R4: `SubstanceNucleicAcid.subunit.sugar.identifier` (new:Identifier)
Element `SubstanceNucleicAcid.subunit.sugar.identifier` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.sugar` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sugar.identifier` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sugar.identifier` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The Substance ID of the sugar or sugar-like component that make up the nucleotide
The Substance ID of the sugar or sugar-like component that make up the nucleotide.
R4: The name of the sugar or sugar-like component that make up the nucleotide (new)
R4: `SubstanceNucleicAcid.subunit.sugar.name` (new:string)
Element `SubstanceNucleicAcid.subunit.sugar.name` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.sugar` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sugar.name` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sugar.name` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The name of the sugar or sugar-like component that make up the nucleotide
The name of the sugar or sugar-like component that make up the nucleotide.
R4: The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above (new)
R4: `SubstanceNucleicAcid.subunit.sugar.residueSite` (new:string)
Element `SubstanceNucleicAcid.subunit.sugar.residueSite` is part of an existing definition because parent element `SubstanceNucleicAcid.subunit.sugar` requires a cross-version extension. Element `SubstanceNucleicAcid.subunit.sugar.residueSite` is not mapped to FHIR STU3, since FHIR R4 `SubstanceNucleicAcid` is not mapped. Element `SubstanceNucleicAcid.subunit.sugar.residueSite` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above
The residues that contain a given sugar will be captured. The order of given residues will be captured in the 5‘-3‘direction consistent with the base sequences listed above.