Generated Narrative: ConceptMap R4-MolecularSequence-element-map-to-R3 Mapping from http://hl7.org/fhir/4.0 to http://hl7.org/fhir/3.0 Group 1 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 Source Code Relationship Target Code Comment MolecularSequence.meta (meta) is equivalent to Sequence.meta Element `MolecularSequence.meta` is mapped to FHIR STU3 element `Sequence.meta` as `Equivalent`. MolecularSequence.implicitRules (implicitRules) is equivalent to Sequence.implicitRules Element `MolecularSequence.implicitRules` is mapped to FHIR STU3 element `Sequence.implicitRules` as `Equivalent`. Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of it's narrative along with other profiles, value sets, etc. MolecularSequence.language (language) is equivalent to Sequence.language Element `MolecularSequence.language` is mapped to FHIR STU3 element `Sequence.language` as `Equivalent`. Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute). MolecularSequence.text (text) is equivalent to Sequence.text Element `MolecularSequence.text` is mapped to FHIR STU3 element `Sequence.text` as `Equivalent`. Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later. MolecularSequence.contained (contained) is equivalent to Sequence.contained Element `MolecularSequence.contained` is mapped to FHIR STU3 element `Sequence.contained` as `Equivalent`. This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags In their meta elements, but SHALL NOT have security labels. MolecularSequence.identifier (identifier) is equivalent to Sequence.identifier Element `MolecularSequence.identifier` is mapped to FHIR STU3 element `Sequence.identifier` as `Equivalent`. MolecularSequence.type (type) maps to wider concept Sequence.type Element `MolecularSequence.type` is mapped to FHIR STU3 element `Sequence.type` as `Equivalent`. MolecularSequence.coordinateSystem (coordinateSystem) is equivalent to Sequence.coordinateSystem Element `MolecularSequence.coordinateSystem` is mapped to FHIR STU3 element `Sequence.coordinateSystem` as `Equivalent`. MolecularSequence.patient (patient) is equivalent to Sequence.patient Element `MolecularSequence.patient` is mapped to FHIR STU3 element `Sequence.patient` as `Equivalent`. MolecularSequence.specimen (specimen) is equivalent to Sequence.specimen Element `MolecularSequence.specimen` is mapped to FHIR STU3 element `Sequence.specimen` as `Equivalent`. MolecularSequence.device (device) is equivalent to Sequence.device Element `MolecularSequence.device` is mapped to FHIR STU3 element `Sequence.device` as `Equivalent`. MolecularSequence.performer (performer) is equivalent to Sequence.performer Element `MolecularSequence.performer` is mapped to FHIR STU3 element `Sequence.performer` as `Equivalent`. MolecularSequence.quantity (quantity) is equivalent to Sequence.quantity Element `MolecularSequence.quantity` is mapped to FHIR STU3 element `Sequence.quantity` as `Equivalent`. MolecularSequence.referenceSeq (referenceSeq) maps to wider concept Sequence.referenceSeq Element `MolecularSequence.referenceSeq` is mapped to FHIR STU3 element `Sequence.referenceSeq` as `Equivalent`. MolecularSequence.referenceSeq.chromosome (chromosome) is equivalent to Sequence.referenceSeq.chromosome Element `MolecularSequence.referenceSeq.chromosome` is mapped to FHIR STU3 element `Sequence.referenceSeq.chromosome` as `Equivalent`. MolecularSequence.referenceSeq.genomeBuild (genomeBuild) is equivalent to Sequence.referenceSeq.genomeBuild Element `MolecularSequence.referenceSeq.genomeBuild` is mapped to FHIR STU3 element `Sequence.referenceSeq.genomeBuild` as `Equivalent`. MolecularSequence.referenceSeq.referenceSeqId (referenceSeqId) is equivalent to Sequence.referenceSeq.referenceSeqId Element `MolecularSequence.referenceSeq.referenceSeqId` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqId` as `Equivalent`. MolecularSequence.referenceSeq.referenceSeqPointer (referenceSeqPointer) is equivalent to Sequence.referenceSeq.referenceSeqPointer Element `MolecularSequence.referenceSeq.referenceSeqPointer` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqPointer` as `Equivalent`. MolecularSequence.referenceSeq.referenceSeqString (referenceSeqString) is equivalent to Sequence.referenceSeq.referenceSeqString Element `MolecularSequence.referenceSeq.referenceSeqString` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqString` as `Equivalent`. MolecularSequence.referenceSeq.strand (strand) maps to wider concept Sequence.referenceSeq.strand Element `MolecularSequence.referenceSeq.strand` is mapped to FHIR STU3 element `Sequence.referenceSeq.strand` as `SourceIsBroaderThanTarget`. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types: code. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types based on type expansion: value. MolecularSequence.referenceSeq.windowStart (windowStart) is equivalent to Sequence.referenceSeq.windowStart Element `MolecularSequence.referenceSeq.windowStart` is mapped to FHIR STU3 element `Sequence.referenceSeq.windowStart` as `Equivalent`. MolecularSequence.referenceSeq.windowEnd (windowEnd) is equivalent to Sequence.referenceSeq.windowEnd Element `MolecularSequence.referenceSeq.windowEnd` is mapped to FHIR STU3 element `Sequence.referenceSeq.windowEnd` as `Equivalent`. MolecularSequence.variant (variant) maps to wider concept Sequence.variant Element `MolecularSequence.variant` is mapped to FHIR STU3 element `Sequence.variant` as `Equivalent`. MolecularSequence.variant.start (start) is equivalent to Sequence.variant.start Element `MolecularSequence.variant.start` is mapped to FHIR STU3 element `Sequence.variant.start` as `Equivalent`. MolecularSequence.variant.end (end) is equivalent to Sequence.variant.end Element `MolecularSequence.variant.end` is mapped to FHIR STU3 element `Sequence.variant.end` as `Equivalent`. MolecularSequence.variant.observedAllele (observedAllele) is equivalent to Sequence.variant.observedAllele Element `MolecularSequence.variant.observedAllele` is mapped to FHIR STU3 element `Sequence.variant.observedAllele` as `Equivalent`. MolecularSequence.variant.referenceAllele (referenceAllele) is equivalent to Sequence.variant.referenceAllele Element `MolecularSequence.variant.referenceAllele` is mapped to FHIR STU3 element `Sequence.variant.referenceAllele` as `Equivalent`. MolecularSequence.variant.cigar (cigar) is equivalent to Sequence.variant.cigar Element `MolecularSequence.variant.cigar` is mapped to FHIR STU3 element `Sequence.variant.cigar` as `Equivalent`. MolecularSequence.variant.variantPointer (variantPointer) is equivalent to Sequence.variant.variantPointer Element `MolecularSequence.variant.variantPointer` is mapped to FHIR STU3 element `Sequence.variant.variantPointer` as `Equivalent`. MolecularSequence.observedSeq (observedSeq) is equivalent to Sequence.observedSeq Element `MolecularSequence.observedSeq` is mapped to FHIR STU3 element `Sequence.observedSeq` as `Equivalent`. MolecularSequence.quality (quality) maps to wider concept Sequence.quality Element `MolecularSequence.quality` is mapped to FHIR STU3 element `Sequence.quality` as `Equivalent`. MolecularSequence.quality.type (type) is equivalent to Sequence.quality.type Element `MolecularSequence.quality.type` is mapped to FHIR STU3 element `Sequence.quality.type` as `Equivalent`. MolecularSequence.quality.standardSequence (standardSequence) is equivalent to Sequence.quality.standardSequence Element `MolecularSequence.quality.standardSequence` is mapped to FHIR STU3 element `Sequence.quality.standardSequence` as `Equivalent`. MolecularSequence.quality.start (start) is equivalent to Sequence.quality.start Element `MolecularSequence.quality.start` is mapped to FHIR STU3 element `Sequence.quality.start` as `Equivalent`. MolecularSequence.quality.end (end) is equivalent to Sequence.quality.end Element `MolecularSequence.quality.end` is mapped to FHIR STU3 element `Sequence.quality.end` as `Equivalent`. MolecularSequence.quality.score (score) is equivalent to Sequence.quality.score Element `MolecularSequence.quality.score` is mapped to FHIR STU3 element `Sequence.quality.score` as `Equivalent`. MolecularSequence.quality.method (method) is equivalent to Sequence.quality.method Element `MolecularSequence.quality.method` is mapped to FHIR STU3 element `Sequence.quality.method` as `Equivalent`. MolecularSequence.quality.truthTP (truthTP) is equivalent to Sequence.quality.truthTP Element `MolecularSequence.quality.truthTP` is mapped to FHIR STU3 element `Sequence.quality.truthTP` as `Equivalent`. MolecularSequence.quality.queryTP (queryTP) is equivalent to Sequence.quality.queryTP Element `MolecularSequence.quality.queryTP` is mapped to FHIR STU3 element `Sequence.quality.queryTP` as `Equivalent`. MolecularSequence.quality.truthFN (truthFN) is equivalent to Sequence.quality.truthFN Element `MolecularSequence.quality.truthFN` is mapped to FHIR STU3 element `Sequence.quality.truthFN` as `Equivalent`. MolecularSequence.quality.queryFP (queryFP) is equivalent to Sequence.quality.queryFP Element `MolecularSequence.quality.queryFP` is mapped to FHIR STU3 element `Sequence.quality.queryFP` as `Equivalent`. MolecularSequence.quality.gtFP (gtFP) is equivalent to Sequence.quality.gtFP Element `MolecularSequence.quality.gtFP` is mapped to FHIR STU3 element `Sequence.quality.gtFP` as `Equivalent`. MolecularSequence.quality.precision (precision) is equivalent to Sequence.quality.precision Element `MolecularSequence.quality.precision` is mapped to FHIR STU3 element `Sequence.quality.precision` as `Equivalent`. MolecularSequence.quality.recall (recall) is equivalent to Sequence.quality.recall Element `MolecularSequence.quality.recall` is mapped to FHIR STU3 element `Sequence.quality.recall` as `Equivalent`. MolecularSequence.quality.fScore (fScore) is equivalent to Sequence.quality.fScore Element `MolecularSequence.quality.fScore` is mapped to FHIR STU3 element `Sequence.quality.fScore` as `Equivalent`. MolecularSequence.readCoverage (readCoverage) is equivalent to Sequence.readCoverage Element `MolecularSequence.readCoverage` is mapped to FHIR STU3 element `Sequence.readCoverage` as `Equivalent`. MolecularSequence.repository (repository) maps to wider concept Sequence.repository Element `MolecularSequence.repository` is mapped to FHIR STU3 element `Sequence.repository` as `Equivalent`. MolecularSequence.repository.type (type) is equivalent to Sequence.repository.type Element `MolecularSequence.repository.type` is mapped to FHIR STU3 element `Sequence.repository.type` as `Equivalent`. MolecularSequence.repository.url (url) is equivalent to Sequence.repository.url Element `MolecularSequence.repository.url` is mapped to FHIR STU3 element `Sequence.repository.url` as `Equivalent`. MolecularSequence.repository.name (name) is equivalent to Sequence.repository.name Element `MolecularSequence.repository.name` is mapped to FHIR STU3 element `Sequence.repository.name` as `Equivalent`. MolecularSequence.repository.datasetId (datasetId) is equivalent to Sequence.repository.datasetId Element `MolecularSequence.repository.datasetId` is mapped to FHIR STU3 element `Sequence.repository.datasetId` as `Equivalent`. MolecularSequence.repository.variantsetId (variantsetId) is equivalent to Sequence.repository.variantsetId Element `MolecularSequence.repository.variantsetId` is mapped to FHIR STU3 element `Sequence.repository.variantsetId` as `Equivalent`. MolecularSequence.repository.readsetId (readsetId) is equivalent to Sequence.repository.readsetId Element `MolecularSequence.repository.readsetId` is mapped to FHIR STU3 element `Sequence.repository.readsetId` as `Equivalent`. MolecularSequence.pointer (pointer) is equivalent to Sequence.pointer Element `MolecularSequence.pointer` is mapped to FHIR STU3 element `Sequence.pointer` as `Equivalent`. Group 2 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to R4: typeversion: 0.1.0) Source Code Relationship Target Code Comment MolecularSequence.type (type) is equivalent to Extension (R4: type) Element `MolecularSequence.type` is mapped to FHIR STU3 element `Sequence.type` as `Equivalent`. Group 3 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to R4: sense | antisense (new)version: 0.1.0) Source Code Relationship Target Code Comment MolecularSequence.referenceSeq.orientation (orientation) maps to wider concept Extension (R4: sense | antisense (new)) Element `MolecularSequence.referenceSeq.orientation` has a context of Sequence.referenceSeq based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.referenceSeq.orientation` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). Group 4 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to R4: watson | crick additional typesversion: 0.1.0) Source Code Relationship Target Code Comment MolecularSequence.referenceSeq.strand (strand) maps to wider concept Extension (R4: watson | crick additional types) Element `MolecularSequence.referenceSeq.strand` is mapped to FHIR STU3 element `Sequence.referenceSeq.strand` as `SourceIsBroaderThanTarget`. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types: code. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types based on type expansion: value. Group 5 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to R4: Receiver Operator Characteristic (ROC) Curve (new)version: 0.1.0) Source Code Relationship Target Code Comment MolecularSequence.quality.roc (roc) maps to wider concept Extension (R4: Receiver Operator Characteristic (ROC) Curve (new)) Element `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.score (score) maps to wider concept Extension.extension:score (R4: Genotype quality score (new)) Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.numTP (numTP) maps to wider concept Extension.extension:numTP (R4: Roc score true positive numbers (new)) Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.numFP (numFP) maps to wider concept Extension.extension:numFP (R4: Roc score false positive numbers (new)) Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.numFN (numFN) maps to wider concept Extension.extension:numFN (R4: Roc score false negative numbers (new)) Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.precision (precision) maps to wider concept Extension.extension:precision (R4: Precision of the GQ score (new)) Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.sensitivity (sensitivity) maps to wider concept Extension.extension:sensitivity (R4: Sensitivity of the GQ score (new)) Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.quality.roc.fMeasure (fMeasure) maps to wider concept Extension.extension:fMeasure (R4: FScore of the GQ score (new)) Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). Group 6 Mapping from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 to R4: Structural variant (new)version: 0.1.0) Source Code Relationship Target Code Comment MolecularSequence.structureVariant (structureVariant) maps to wider concept Extension (R4: Structural variant (new)) Element `MolecularSequence.structureVariant` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.variantType (variantType) maps to wider concept Extension.extension:variantType (R4: Structural variant change type (new)) Element `MolecularSequence.structureVariant.variantType` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.variantType` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.variantType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.exact (exact) maps to wider concept Extension.extension:exact (R4: Does the structural variant have base pair resolution breakpoints? (new)) Element `MolecularSequence.structureVariant.exact` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.exact` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.exact` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.length (length) maps to wider concept Extension.extension:length (R4: Structural variant length (new)) Element `MolecularSequence.structureVariant.length` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.length` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.length` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.outer (outer) maps to wider concept Extension.extension:outer (R4: Structural variant outer (new)) Element `MolecularSequence.structureVariant.outer` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.outer.start (start) maps to wider concept Extension.extension:outer.extension:start (R4: Structural variant outer start (new)) Element `MolecularSequence.structureVariant.outer.start` is part of an existing definition because parent element `MolecularSequence.structureVariant.outer` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer.start` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer.start` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.outer.end (end) maps to wider concept Extension.extension:outer.extension:end (R4: Structural variant outer end (new)) Element `MolecularSequence.structureVariant.outer.end` is part of an existing definition because parent element `MolecularSequence.structureVariant.outer` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer.end` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer.end` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.inner (inner) maps to wider concept Extension.extension:inner (R4: Structural variant inner (new)) Element `MolecularSequence.structureVariant.inner` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.inner.start (start) maps to wider concept Extension.extension:inner.extension:start (R4: Structural variant inner start (new)) Element `MolecularSequence.structureVariant.inner.start` is part of an existing definition because parent element `MolecularSequence.structureVariant.inner` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner.start` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner.start` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element). MolecularSequence.structureVariant.inner.end (end) maps to wider concept Extension.extension:inner.extension:end (R4: Structural variant inner end (new)) Element `MolecularSequence.structureVariant.inner.end` is part of an existing definition because parent element `MolecularSequence.structureVariant.inner` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner.end` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner.end` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Cross-version mapping for FHIR R4 MolecularSequence to FHIR STU3 Sequence
This ConceptMap represents cross-version mappings for elements from a FHIR R4 MolecularSequence to FHIR STU3.
Element `MolecularSequence.meta` is mapped to FHIR STU3 element `Sequence.meta` as `Equivalent`.
Element `MolecularSequence.implicitRules` is mapped to FHIR STU3 element `Sequence.implicitRules` as `Equivalent`. Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of it's narrative along with other profiles, value sets, etc.
Element `MolecularSequence.language` is mapped to FHIR STU3 element `Sequence.language` as `Equivalent`. Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute).
Element `MolecularSequence.text` is mapped to FHIR STU3 element `Sequence.text` as `Equivalent`. Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later.
Element `MolecularSequence.contained` is mapped to FHIR STU3 element `Sequence.contained` as `Equivalent`. This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags In their meta elements, but SHALL NOT have security labels.
Element `MolecularSequence.identifier` is mapped to FHIR STU3 element `Sequence.identifier` as `Equivalent`.
Element `MolecularSequence.type` is mapped to FHIR STU3 element `Sequence.type` as `Equivalent`.
Element `MolecularSequence.coordinateSystem` is mapped to FHIR STU3 element `Sequence.coordinateSystem` as `Equivalent`.
Element `MolecularSequence.patient` is mapped to FHIR STU3 element `Sequence.patient` as `Equivalent`.
Element `MolecularSequence.specimen` is mapped to FHIR STU3 element `Sequence.specimen` as `Equivalent`.
Element `MolecularSequence.device` is mapped to FHIR STU3 element `Sequence.device` as `Equivalent`.
Element `MolecularSequence.performer` is mapped to FHIR STU3 element `Sequence.performer` as `Equivalent`.
Element `MolecularSequence.quantity` is mapped to FHIR STU3 element `Sequence.quantity` as `Equivalent`.
Element `MolecularSequence.referenceSeq` is mapped to FHIR STU3 element `Sequence.referenceSeq` as `Equivalent`.
Element `MolecularSequence.referenceSeq.chromosome` is mapped to FHIR STU3 element `Sequence.referenceSeq.chromosome` as `Equivalent`.
Element `MolecularSequence.referenceSeq.genomeBuild` is mapped to FHIR STU3 element `Sequence.referenceSeq.genomeBuild` as `Equivalent`.
Element `MolecularSequence.referenceSeq.referenceSeqId` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqId` as `Equivalent`.
Element `MolecularSequence.referenceSeq.referenceSeqPointer` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqPointer` as `Equivalent`.
Element `MolecularSequence.referenceSeq.referenceSeqString` is mapped to FHIR STU3 element `Sequence.referenceSeq.referenceSeqString` as `Equivalent`.
Element `MolecularSequence.referenceSeq.strand` is mapped to FHIR STU3 element `Sequence.referenceSeq.strand` as `SourceIsBroaderThanTarget`. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types: code. The mappings for `MolecularSequence.referenceSeq.strand` do not cover the following types based on type expansion: value.
Element `MolecularSequence.referenceSeq.windowStart` is mapped to FHIR STU3 element `Sequence.referenceSeq.windowStart` as `Equivalent`.
Element `MolecularSequence.referenceSeq.windowEnd` is mapped to FHIR STU3 element `Sequence.referenceSeq.windowEnd` as `Equivalent`.
Element `MolecularSequence.variant` is mapped to FHIR STU3 element `Sequence.variant` as `Equivalent`.
Element `MolecularSequence.variant.start` is mapped to FHIR STU3 element `Sequence.variant.start` as `Equivalent`.
Element `MolecularSequence.variant.end` is mapped to FHIR STU3 element `Sequence.variant.end` as `Equivalent`.
Element `MolecularSequence.variant.observedAllele` is mapped to FHIR STU3 element `Sequence.variant.observedAllele` as `Equivalent`.
Element `MolecularSequence.variant.referenceAllele` is mapped to FHIR STU3 element `Sequence.variant.referenceAllele` as `Equivalent`.
Element `MolecularSequence.variant.cigar` is mapped to FHIR STU3 element `Sequence.variant.cigar` as `Equivalent`.
Element `MolecularSequence.variant.variantPointer` is mapped to FHIR STU3 element `Sequence.variant.variantPointer` as `Equivalent`.
Element `MolecularSequence.observedSeq` is mapped to FHIR STU3 element `Sequence.observedSeq` as `Equivalent`.
Element `MolecularSequence.quality` is mapped to FHIR STU3 element `Sequence.quality` as `Equivalent`.
Element `MolecularSequence.quality.type` is mapped to FHIR STU3 element `Sequence.quality.type` as `Equivalent`.
Element `MolecularSequence.quality.standardSequence` is mapped to FHIR STU3 element `Sequence.quality.standardSequence` as `Equivalent`.
Element `MolecularSequence.quality.start` is mapped to FHIR STU3 element `Sequence.quality.start` as `Equivalent`.
Element `MolecularSequence.quality.end` is mapped to FHIR STU3 element `Sequence.quality.end` as `Equivalent`.
Element `MolecularSequence.quality.score` is mapped to FHIR STU3 element `Sequence.quality.score` as `Equivalent`.
Element `MolecularSequence.quality.method` is mapped to FHIR STU3 element `Sequence.quality.method` as `Equivalent`.
Element `MolecularSequence.quality.truthTP` is mapped to FHIR STU3 element `Sequence.quality.truthTP` as `Equivalent`.
Element `MolecularSequence.quality.queryTP` is mapped to FHIR STU3 element `Sequence.quality.queryTP` as `Equivalent`.
Element `MolecularSequence.quality.truthFN` is mapped to FHIR STU3 element `Sequence.quality.truthFN` as `Equivalent`.
Element `MolecularSequence.quality.queryFP` is mapped to FHIR STU3 element `Sequence.quality.queryFP` as `Equivalent`.
Element `MolecularSequence.quality.gtFP` is mapped to FHIR STU3 element `Sequence.quality.gtFP` as `Equivalent`.
Element `MolecularSequence.quality.precision` is mapped to FHIR STU3 element `Sequence.quality.precision` as `Equivalent`.
Element `MolecularSequence.quality.recall` is mapped to FHIR STU3 element `Sequence.quality.recall` as `Equivalent`.
Element `MolecularSequence.quality.fScore` is mapped to FHIR STU3 element `Sequence.quality.fScore` as `Equivalent`.
Element `MolecularSequence.readCoverage` is mapped to FHIR STU3 element `Sequence.readCoverage` as `Equivalent`.
Element `MolecularSequence.repository` is mapped to FHIR STU3 element `Sequence.repository` as `Equivalent`.
Element `MolecularSequence.repository.type` is mapped to FHIR STU3 element `Sequence.repository.type` as `Equivalent`.
Element `MolecularSequence.repository.url` is mapped to FHIR STU3 element `Sequence.repository.url` as `Equivalent`.
Element `MolecularSequence.repository.name` is mapped to FHIR STU3 element `Sequence.repository.name` as `Equivalent`.
Element `MolecularSequence.repository.datasetId` is mapped to FHIR STU3 element `Sequence.repository.datasetId` as `Equivalent`.
Element `MolecularSequence.repository.variantsetId` is mapped to FHIR STU3 element `Sequence.repository.variantsetId` as `Equivalent`.
Element `MolecularSequence.repository.readsetId` is mapped to FHIR STU3 element `Sequence.repository.readsetId` as `Equivalent`.
Element `MolecularSequence.pointer` is mapped to FHIR STU3 element `Sequence.pointer` as `Equivalent`.
Element `MolecularSequence.referenceSeq.orientation` has a context of Sequence.referenceSeq based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.referenceSeq.orientation` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.score` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.score` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.score` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.numTP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numTP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numTP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.numFP` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numFP` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numFP` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.numFN` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.numFN` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.numFN` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.precision` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.precision` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.precision` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.sensitivity` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.sensitivity` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.sensitivity` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.quality.roc.fMeasure` is part of an existing definition because parent element `MolecularSequence.quality.roc` requires a cross-version extension. Element `MolecularSequence.quality.roc.fMeasure` has a context of Sequence.quality based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.quality.roc.fMeasure` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.variantType` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.variantType` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.variantType` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.exact` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.exact` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.exact` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.length` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.length` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.length` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.outer` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.outer.start` is part of an existing definition because parent element `MolecularSequence.structureVariant.outer` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer.start` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer.start` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.outer.end` is part of an existing definition because parent element `MolecularSequence.structureVariant.outer` requires a cross-version extension. Element `MolecularSequence.structureVariant.outer.end` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.outer.end` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.inner` is part of an existing definition because parent element `MolecularSequence.structureVariant` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.inner.start` is part of an existing definition because parent element `MolecularSequence.structureVariant.inner` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner.start` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner.start` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).
Element `MolecularSequence.structureVariant.inner.end` is part of an existing definition because parent element `MolecularSequence.structureVariant.inner` requires a cross-version extension. Element `MolecularSequence.structureVariant.inner.end` has a context of Sequence based on following the parent source element upwards and mapping to `Sequence`. Element `MolecularSequence.structureVariant.inner.end` has no mapping targets in FHIR STU3. Typically, this is because the element has been added (is a new element).