Situational Awareness for Novel Epidemic Response
1.0.0 - STU Release

This page is part of the Situational Awareness for Novel Epidemic Response (v1.0.0: STU 1) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: SARSCoV2 Genetic Labs - XML Representation

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<ValueSet xmlns="http://hl7.org/fhir">
  <id value="SARSCoV2GeneticLabs"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><ul><li>Include these codes as defined in <a href="http://loinc.org"><code>http://loinc.org</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href="http://details.loinc.org/LOINC/94307-6.html">94307-6</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94308-4.html">94308-4</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94309-2.html">94309-2</a></td><td>SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94310-0.html">94310-0</a></td><td>SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94314-2.html">94314-2</a></td><td>SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94315-9.html">94315-9</a></td><td>SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94316-7.html">94316-7</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94500-6.html">94500-6</a></td><td>SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94533-7.html">94533-7</a></td><td>SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94534-5.html">94534-5</a></td><td>SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection</td></tr><tr><td><a href="http://details.loinc.org/LOINC/94559-2.html">94559-2</a></td><td>SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection</td></tr></table></li></ul></div>
  </text>
  <url value="http://hl7.org/fhir/uv/saner/ValueSet/SARSCoV2GeneticLabs"/>
  <version value="1.0.0"/>
  <name value="SARSCoV2GeneticLabs"/>
  <title value="SARSCoV2 Genetic Labs"/>
  <status value="draft"/>
  <date value="2021-09-07T19:19:32+00:00"/>
  <publisher value="HL7 International Public Health Workgroup"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://hl7.org/Special/committees/pher"/>
    </telecom>
  </contact>
  <contact>
    <telecom>
      <system value="email"/>
      <value value="pher@lists.hl7.org"/>
    </telecom>
  </contact>
  <contact>
    <name value="Keith W. Boone"/>
    <telecom>
      <system value="email"/>
      <value value="mailto:kboone@ainq.com"/>
    </telecom>
  </contact>
  <description
               value="This Value Set identifies Lab tests using gene-based testing instead of other methods (e.g., Antibody testing)"/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
    </coding>
  </jurisdiction>
  <copyright
             value="This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc"/>
  <compose>
    <include>
      <system value="http://loinc.org"/>
      <concept>
        <code value="94307-6"/>
        <display
                 value="SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1"/>
      </concept>
      <concept>
        <code value="94308-4"/>
        <display
                 value="SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2"/>
      </concept>
      <concept>
        <code value="94309-2"/>
        <display
                 value="SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94310-0"/>
        <display
                 value="SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94314-2"/>
        <display
                 value="SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94315-9"/>
        <display
                 value="SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94316-7"/>
        <display
                 value="SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94500-6"/>
        <display
                 value="SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94533-7"/>
        <display
                 value="SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94534-5"/>
        <display
                 value="SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection"/>
      </concept>
      <concept>
        <code value="94559-2"/>
        <display
                 value="SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection"/>
      </concept>
    </include>
  </compose>
</ValueSet>