FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot International flag

This page is part of the Vulcan FHIR to OMOP FHIR Implementation Guide (v1.0.0-ballot: INFORMATIVE 1 Ballot 1) based on FHIR (HL7® FHIR® Standard) v5.0.0. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

: Mapping Procedure resource to Procedure Occurrence OMOP Domain - TTL Representation

Page standards status: Informative Maturity Level: 1

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:StructureMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "ProcedureMap"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap ProcedureMap</b></p><a name=\"ProcedureMap\"> </a><a name=\"hcProcedureMap\"> </a><pre class=\"fml\">#xD;\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/ProcedureMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'ProcedureMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Procedure resource to Procedure Occurrence OMOP Domain'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>#xD;\n#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"http://hl7.org/fhir/R5/procedure.html\" title=\"Procedure\">http://hl7.org/fhir/StructureDefinition/Procedure</a><span style=\"color: navy\">\" </span><b>alias </b>Procedure <b>as </b><b>source</b>#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"StructureDefinition-ProcedureOccurrence.html\" title=\"Procedure Occurrence OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence</a><span style=\"color: navy\">\" </span><b>alias </b>ProcedureTable <b>as </b><b>target</b>#xD;\n#xD;\n<b>group </b>ProcedureOccurrence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Procedure, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>ProcedureTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {#xD;\n</span>  src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span>    s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span>      sc.code<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -&gt; </b></span> tgt.procedure_concept_id<span style=\"color: navy\">, </span> tgt.procedure_source_value<span style=\"color: navy\">, </span> tgt.procedure_source_concept_id = <span style=\"color: maroon\">a</span><span style=\"color: navy\">;</span>#xD;\n    <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.id as id -&gt; tgt.procedure_occurrence_id = cast(id, \"integer\");</span>#xD;\n  src.occurrence<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">edt</span><span style=\"color: navy\"><b> -&gt; </b></span> tgt.procedure_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">edt</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.procedure_date = <span style=\"color: maroon\">edt</span><span style=\"color: navy\">;</span>#xD;\n  src.occurrence<span style=\"color: navy\"> : </span>Period<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span>    s.start<b> as </b><span style=\"color: maroon\">start</span><span style=\"color: navy\"><b> -&gt; </b></span> tgt.procedure_datetime = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">start</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.procedure_date = <span style=\"color: maroon\">start</span><span style=\"color: navy\">;</span>#xD;\n    s.end<b> as </b><span style=\"color: maroon\">end</span><span style=\"color: navy\"><b> -&gt; </b></span> tgt.procedure_end_datetime<span style=\"color: navy\">, </span> tgt.procedure_end_date = <span style=\"color: maroon\">end</span><span style=\"color: navy\">;</span>#xD;\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n<span style=\"color: navy\">}#xD;\n#xD;\n</span></pre></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "brr"     ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 1 ;
      ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop>         ]       ] )     ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "informative" ;
      ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop>         ]       ] )     ]
  ] ) ; # 
  fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/ProcedureMap"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.0.0-ballot"] ; # 
  fhir:name [ fhir:v "ProcedureMap"] ; # 
  fhir:title [ fhir:v "Mapping Procedure resource to Procedure Occurrence OMOP Domain"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:date [ fhir:v "2025-07-29T21:03:04+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "This mapping maps FHIR Procedure instances to OMOP Procedure Occurrence Table objects."] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "001" ] ;
fhir:display [ fhir:v "World" ]     ] )
  ] ) ; # 
  fhir:structure ( [
fhir:url [
fhir:v "http://hl7.org/fhir/StructureDefinition/Procedure"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Procedure>     ] ;
fhir:mode [ fhir:v "source" ] ;
fhir:alias [ fhir:v "Procedure" ]
  ] [
fhir:url [
fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/StructureDefinition/ProcedureOccurrence>     ] ;
fhir:mode [ fhir:v "target" ] ;
fhir:alias [ fhir:v "ProcedureTable" ]
  ] ) ; # 
  fhir:group ( [
fhir:name [ fhir:v "ProcedureOccurrence" ] ;
    ( fhir:input [
fhir:name [ fhir:v "src" ] ;
fhir:type [ fhir:v "Procedure" ] ;
fhir:mode [ fhir:v "source" ]     ] [
fhir:name [ fhir:v "tgt" ] ;
fhir:type [ fhir:v "ProcedureTable" ] ;
fhir:mode [ fhir:v "target" ]     ] ) ;
    ( fhir:rule [
fhir:name [ fhir:v "code" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "s" ]       ] ) ;
      ( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
        ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt"           ]         ] )       ] ) ;
      ( fhir:rule [
fhir:name [ fhir:v "coding" ] ;
        ( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "coding" ] ;
fhir:variable [ fhir:v "sc" ]         ] ) ;
        ( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
          ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt"             ]           ] )         ] ) ;
        ( fhir:rule [
fhir:name [ fhir:v "code" ] ;
          ( fhir:source [
fhir:context [ fhir:v "sc" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "a" ]           ] ) ;
          ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_concept_id" ]           ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_source_value" ]           ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_source_concept_id" ] ;
fhir:transform [ fhir:v "copy" ] ;
            ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "a"               ]             ] )           ] )         ] )       ] ) ;
fhir:documentation [ fhir:v "src.id as id -> tgt.procedure_occurrence_id = cast(id, \"integer\");" ]     ] [
fhir:name [ fhir:v "occurrenceDateTime" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:type [ fhir:v "dateTime" ] ;
fhir:element [ fhir:v "occurrence" ] ;
fhir:variable [ fhir:v "edt" ]       ] ) ;
      ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_datetime" ] ;
fhir:transform [ fhir:v "cast" ] ;
        ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "edt"           ]         ] [
fhir:value [
a fhir:string ;
fhir:v "dateTime"           ]         ] )       ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_date" ] ;
fhir:transform [ fhir:v "copy" ] ;
        ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "edt"           ]         ] )       ] )     ] [
fhir:name [ fhir:v "occurrencePeriod" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:type [ fhir:v "Period" ] ;
fhir:element [ fhir:v "occurrence" ] ;
fhir:variable [ fhir:v "s" ]       ] ) ;
      ( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
        ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt"           ]         ] )       ] ) ;
      ( fhir:rule [
fhir:name [ fhir:v "start" ] ;
        ( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "start" ] ;
fhir:variable [ fhir:v "start" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_datetime" ] ;
fhir:transform [ fhir:v "cast" ] ;
          ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "start"             ]           ] [
fhir:value [
a fhir:string ;
fhir:v "dateTime"             ]           ] )         ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_date" ] ;
fhir:transform [ fhir:v "copy" ] ;
          ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "start"             ]           ] )         ] )       ] [
fhir:name [ fhir:v "end" ] ;
        ( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "end" ] ;
fhir:variable [ fhir:v "end" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_end_datetime" ]         ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "procedure_end_date" ] ;
fhir:transform [ fhir:v "copy" ] ;
          ( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "end"             ]           ] )         ] )       ] )     ] )
  ] ) . #