Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

ValueSet: Variant Confidence Status

Summary

Defining URL:http://hl7.org/fhir/uv/genomics-reporting/ValueSet/variant-confidence-status-vs
Version:2.0.0
Name:VariantConfidenceStatusVS
Title:Variant Confidence Status
Status:Active as of 2022-05-09 04:59:16+0000
Definition:

A code that classifies the confidence for calling this variant.

Publisher:HL7 Clinical Genomics Working Group
Source Resource:XML / JSON / Turtle

References

Logical Definition (CLD)

 

Expansion

This value set contains 3 concepts

Expansion based on Variant Confidence Status Codes v2.0.0 (CodeSystem)

All codes in this table are from the system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs

CodeDisplayDefinition
  highHighHigh confidence true positive variant call. Suitable for clinical reporting.
  intermediateIntermediateCandidate true positive variant call. Unable to confirm without additional testing.
  lowLowHigh confidence false positive variant call.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code