Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

Example Procedure: lungMass

Generated Narrative: Procedure lungMass

Genomic Study Analysis Extension: Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,->Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,->John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.

Genomic Study Analysis Extension: Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,->Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,->John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.

basedOn: ServiceRequest Molecular genetic test (procedure)

status: Completed

category: Laboratory

code: Solid tumor whole exome sequencing panel

subject: John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --> (ongoing)))

performed: 2019-03-01

asserter: Practitioner Jane Doel

reasonCode: Lung mass (finding)

note: For technical reasons, PIK3CB was deemed uncallable.