Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: genomicFileProbandBAM - JSON Representation

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{
  "resourceType" : "DocumentReference",
  "id" : "genomicFileProbandBAM",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DocumentReference genomicFileProbandBAM</b></p><a name=\"genomicFileProbandBAM\"> </a><a name=\"hcgenomicFileProbandBAM\"> </a><a name=\"genomicFileProbandBAM-en-US\"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/files</code>/11118</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoChild.html\">Child Denovo (official) (no stated gender), DoB Unknown ( Medical record number: 1234-11111\u00a0(use:\u00a0temp,\u00a0))</a></p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}\">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"http://www.somesystemabc.net/identifiers/files/11111\">http://www.somesystemabc.net/identifiers/files/11111</a></td><td>Probands BAM file</td></tr></table></blockquote></div>"
  },
  "identifier" : [
    {
      "system" : "http://www.somesystemabc.net/identifiers/files",
      "value" : "11118"
    }
  ],
  "status" : "current",
  "docStatus" : "preliminary",
  "subject" : {
    🔗 "reference" : "Patient/denovoChild"
  },
  "description" : "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.",
  "securityLabel" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/v3-Confidentiality",
          "code" : "R",
          "display" : "Restricted"
        }
      ]
    }
  ],
  "content" : [
    {
      "attachment" : {
        "url" : "http://www.somesystemabc.net/identifiers/files/11111",
        "title" : "Probands BAM file"
      }
    }
  ]
}