Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: GenRiskDiabetesT2 - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:RiskAssessment;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "GenRiskDiabetesT2"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"GenRiskDiabetesT2\" </p></div><p><b>parent</b>: <a href=\"Observation-PolyGenicDiagnosticImpExample.html\">Observation/PolyGenicDiagnosticImpExample</a></p><p><b>status</b>: final</p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Patient/CGPatientExample01</a> \" EVERYMAN\"</p><p><b>basis</b>: </p><ul><li><span>: Variant 1</span></li><li><span>: Variant 2</span></li><li><span>: Variant 3</span></li><li><span>: Variant 4</span></li><li><span>: Variant 5</span></li><li><span>: Variant 6</span></li><li><span>: Variant 7</span></li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: Low likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-risk-probability.html\">Risk Probability</a>#low)</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: High likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-risk-probability.html\">Risk Probability</a>#high)</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>"
  ];
  fhir:RiskAssessment.parent [
     fhir:Reference.reference [ fhir:value "Observation/PolyGenicDiagnosticImpExample" ]
  ];
  fhir:RiskAssessment.status [ fhir:value "final"];
  fhir:RiskAssessment.subject [
     fhir:Reference.reference [ fhir:value "Patient/CGPatientExample01" ]
  ];
  fhir:RiskAssessment.basis [
     fhir:index 0;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "11" ]     ];
     fhir:Reference.display [ fhir:value "Variant 1" ]
  ], [
     fhir:index 1;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "12" ]     ];
     fhir:Reference.display [ fhir:value "Variant 2" ]
  ], [
     fhir:index 2;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "13" ]     ];
     fhir:Reference.display [ fhir:value "Variant 3" ]
  ], [
     fhir:index 3;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "14" ]     ];
     fhir:Reference.display [ fhir:value "Variant 4" ]
  ], [
     fhir:index 4;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "15" ]     ];
     fhir:Reference.display [ fhir:value "Variant 5" ]
  ], [
     fhir:index 5;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "16" ]     ];
     fhir:Reference.display [ fhir:value "Variant 6" ]
  ], [
     fhir:index 6;
     fhir:Reference.identifier [
       fhir:Identifier.system [ fhir:value "http://hospital.example.org" ];
       fhir:Identifier.value [ fhir:value "17" ]     ];
     fhir:Reference.display [ fhir:value "Variant 7" ]
  ];
  fhir:RiskAssessment.prediction [
     fhir:index 0;
     fhir:RiskAssessment.prediction.outcome [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:44054006;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "44054006" ];
         fhir:Coding.display [ fhir:value "Diabetes mellitus type 2 (disorder)" ]       ]     ];
     fhir:RiskAssessment.prediction.probabilityDecimal [ fhir:value "0.26"^^xsd:decimal ];
     fhir:RiskAssessment.prediction.qualitativeRisk [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/risk-probability" ];
         fhir:Coding.code [ fhir:value "low" ];
         fhir:Coding.display [ fhir:value "Low likelihood" ]       ]     ];
     fhir:RiskAssessment.prediction.relativeRisk [ fhir:value "1.05"^^xsd:decimal ];
     fhir:RiskAssessment.prediction.whenRange [
       fhir:Range.high [
         fhir:Quantity.value [ fhir:value "53"^^xsd:decimal ];
         fhir:Quantity.unit [ fhir:value "years" ];
         fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
         fhir:Quantity.code [ fhir:value "a" ]       ]     ]
  ], [
     fhir:index 1;
     fhir:RiskAssessment.prediction.outcome [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:44054006;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "44054006" ];
         fhir:Coding.display [ fhir:value "Diabetes mellitus type 2 (disorder)" ]       ]     ];
     fhir:RiskAssessment.prediction.probabilityDecimal [ fhir:value "0.7"^^xsd:decimal ];
     fhir:RiskAssessment.prediction.qualitativeRisk [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/risk-probability" ];
         fhir:Coding.code [ fhir:value "high" ];
         fhir:Coding.display [ fhir:value "High likelihood" ]       ]     ];
     fhir:RiskAssessment.prediction.relativeRisk [ fhir:value "2.69"^^xsd:decimal ];
     fhir:RiskAssessment.prediction.whenRange [
       fhir:Range.high [
         fhir:Quantity.value [ fhir:value "65"^^xsd:decimal ];
         fhir:Quantity.unit [ fhir:value "years" ];
         fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
         fhir:Quantity.code [ fhir:value "a" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.